Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 0.0e+00 1412.1 689 100.0
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 0.0e+00 1301.6 680 91.9
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 0.0e+00 1280.4 674 91.7
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 0.0e+00 1279.6 674 91.8
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 0.0e+00 1277.3 658 93.3
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 0.0e+00 1276.5 674 91.5
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 0.0e+00 1228.8 705 85.8
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 0.0e+00 1155.6 660 82.7
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 0.0e+00 1150.2 652 82.7
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 0.0e+00 1129.0 659 81.5
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1128.6 622 84.9
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 0.0e+00 1124.0 621 84.9
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 0.0e+00 1114.0 655 79.5
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 0.0e+00 1112.4 619 83.8
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 0.0e+00 1110.1 617 84.6
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 0.0e+00 1107.8 656 80.3
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 0.0e+00 1107.4 656 80.3
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 0.0e+00 1107.4 665 79.7
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 0.0e+00 1104.0 646 80.0
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 0.0e+00 1099.0 652 79.8
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 0.0e+00 1097.8 656 78.7
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 0.0e+00 1096.6 662 78.2
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 0.0e+00 1095.5 698 75.9
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 0.0e+00 1094.7 650 79.4
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 0.0e+00 1094.3 637 80.2
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 0.0e+00 1094.0 629 82.0
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 0.0e+00 1092.0 655 78.3
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 0.0e+00 1091.3 677 76.7
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 0.0e+00 1078.5 619 81.6
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 0.0e+00 1076.2 654 78.0
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 5.7e-311 1070.5 678 75.4
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 7.1e-311 1070.1 650 78.8
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 1.2e-310 1069.3 615 81.5
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 2.1e-310 1068.5 634 79.0
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 3.9e-309 1064.3 657 76.6
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 5.1e-309 1063.9 638 77.6
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 2.6e-308 1061.6 644 76.7
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 4.4e-308 1060.8 682 74.6
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 7.4e-308 1060.1 650 76.5
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 3.7e-307 1057.7 648 77.0
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 3.7e-307 1057.7 616 80.5
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 1.1e-306 1056.2 632 78.3
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 7.0e-306 1053.5 648 76.9
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 3.5e-305 1051.2 667 73.9
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 2.3e-301 1038.5 664 75.2
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 6.3e-299 1030.4 627 77.4
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 8.2e-299 1030.0 619 76.4
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 1.8e-298 1028.9 658 75.7
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 2.4e-298 1028.5 651 75.1
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 2.4e-298 1028.5 644 76.2
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 4.1e-298 1027.7 651 75.1
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 4.1e-298 1027.7 633 76.0
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 4.1e-298 1027.7 633 76.0
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 4.1e-298 1027.7 633 76.0
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 4.1e-298 1027.7 622 76.2
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 2.9e-296 1021.5 622 76.7
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 2.9e-296 1021.5 619 76.7
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 3.8e-296 1021.1 700 70.3
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 5.0e-296 1020.8 618 76.9
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 1.5e-295 1019.2 626 75.7
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 1.9e-295 1018.8 628 76.3
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 5.5e-295 1017.3 663 71.3
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 3.0e-293 1011.5 687 69.6
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 8.8e-293 1010.0 628 75.5
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 4.8e-291 1004.2 616 76.8
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 3.5e-289 998.0 632 74.4
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 1.7e-288 995.7 633 74.2
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 1.7e-288 995.7 632 74.2
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 1.7e-288 995.7 659 72.1
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 2.2e-288 995.3 659 72.2
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 3.8e-288 994.6 632 73.9
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 8.5e-288 993.4 662 71.8
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 1.2e-286 989.6 626 75.1
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 1.6e-286 989.2 687 69.9
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.6e-286 988.0 687 69.9
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 2.3e-285 985.3 627 73.0
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 6.8e-285 983.8 732 66.4
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 5.7e-284 980.7 638 74.1
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 1.7e-283 979.2 682 69.5
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 3.7e-283 978.0 626 74.8
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 2.7e-281 971.8 539 83.7
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 2.3e-280 968.8 564 79.1
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 5.0e-280 967.6 623 74.5
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 5.6e-279 964.1 655 70.1
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 6.1e-278 960.7 631 72.6
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 1.5e-276 956.1 667 71.4
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 1.3e-275 953.0 601 75.4
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 3.7e-275 951.4 619 72.4
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 9.2e-274 946.8 556 81.1
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 3.5e-273 944.9 682 67.2
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 5.9e-273 944.1 709 67.3
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 3.0e-272 941.8 665 66.0
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 1.1e-271 939.9 627 71.8
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 5.6e-271 937.6 626 72.7
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 6.2e-270 934.1 647 69.2
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 3.1e-269 931.8 649 71.8
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 2.2e-267 925.6 644 68.5
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.9e-264 914.8 735 63.0
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 4.3e-263 911.4 692 66.0
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 1.2e-254 883.2 647 67.2
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 8.9e-253 877.1 659 65.4
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 8.4e-251 870.5 620 67.4
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.5e-247 859.8 681 65.1
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 4.0e-245 851.7 629 63.1
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.6e-244 849.0 663 63.7
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 7.6e-244 847.4 657 65.1
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 2.4e-237 825.9 689 58.8
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 1.1e-234 817.0 710 60.1
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 9.3e-234 813.9 655 62.9
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 2.5e-231 805.8 553 69.3
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 6.2e-230 801.2 644 58.9
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 1.1e-229 800.4 583 68.3
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 1.4e-226 790.0 676 57.7
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 9.6e-223 777.3 621 60.1
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 5.9e-212 741.5 488 73.6
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 5.0e-211 738.4 654 59.2
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 2.1e-209 733.0 655 58.5
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.8e-208 729.9 460 75.4
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 2.5e-207 726.1 430 78.6
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 2.4e-205 719.5 564 61.7
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.5e-204 716.8 562 63.2
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 8.8e-200 701.0 513 68.6
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.3e-199 698.7 663 56.0
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 3.3e-191 672.5 410 77.6
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.0e-184 651.0 463 67.2
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 1.0e-184 651.0 432 70.6
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 1.7e-182 643.7 440 68.6
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 3.6e-177 625.9 423 68.3
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 6.8e-176 621.7 423 67.8
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 7.5e-175 618.2 685 48.5
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 5.6e-162 575.5 719 42.8
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 8.3e-150 535.0 634 43.5
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.0e-147 528.1 445 59.6
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 4.0e-144 516.2 449 57.2
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 3.5e-140 503.1 662 42.3
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 2.7e-132 476.9 626 39.8
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 8.1e-129 465.3 319 68.7
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.0e-115 420.2 434 50.9
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 1.8e-104 384.4 226 80.1
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 3.4e-95 353.6 189 84.7
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 3.4e-95 353.6 192 84.4
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 1.1e-90 338.6 183 84.2
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.5e-87 328.2 169 87.6
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 1.4e-83 315.1 197 75.6
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.8e-80 304.7 185 74.6
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.6e-79 300.8 185 73.0
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 6.3e-73 279.6 185 69.7
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 5.3e-72 276.6 156 79.5
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 8.0e-68 262.7 166 75.3
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.2e-66 258.8 136 86.0
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 3.1e-64 250.8 163 76.1
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 2.2e-57 228.0 151 70.2
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 6.1e-52 209.9 103 89.3
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 1.8e-43 181.8 113 76.1
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 2.9e-41 174.5 84 90.5
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 1.3e-38 165.6 111 69.4
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.3e-38 165.6 140 63.6
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 1.1e-32 146.0 79 82.3
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 1.5e-29 135.6 115 53.9
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 3.1e-27 127.9 75 76.0
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 3.4e-26 124.4 72 75.0
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 5.8e-26 123.6 72 77.8
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 2.2e-25 121.7 147 44.9
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 6.4e-25 120.2 129 50.4
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 6.6e-14 83.6 50 70.0
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 1.4e-11 75.9 50 68.0
Actinidia22191 Actinidia chinensis HOM05D000645 ORTHO05D000494 6.9e-11 73.6 350 22.9
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 9.0e-11 73.2 38 84.2
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 6.4e-09 67.0 43 69.8
CiPaw.11G115000 Carya illinoinensis HOM05D000645 ORTHO05D000494 1.1e-08 66.2 247 24.3
Haze_09130 Corylus avellana HOM05D000645 ORTHO05D000494 1.9e-08 65.5 261 24.9
Os03g0115400 Oryza sativa ssp. japonica HOM05D000645 ORTHO05D000494 1.9e-08 65.5 348 20.7
Ciclev10019710m.g Citrus clementina HOM05D000645 ORTHO05D000494 5.4e-08 63.9 245 22.9
HPP92_014454 Vanilla planifolia HOM05D000645 ORTHO05D000494 5.4e-08 63.9 242 23.6
Duzib068G1010 Durio zibethinus HOM05D000645 ORTHO05D000494 9.3e-08 63.2 247 23.9
Rhsim11G0125000 Rhododendron simsii HOM05D004134 ORTHO05D339485 2.1e-07 62.0 63 54.0
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 3.5e-07 61.2 222 24.3
MD06G1113900 Malus domestica HOM05D000645 ORTHO05D000494 2.3e-06 58.5 278 23.0
Glyma.02G282600 Glycine max HOM05D001610 ORTHO05D001585 3.0e-06 58.2 240 21.7
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 5.1e-06 57.4 302 22.8
HPP92_003386 Vanilla planifolia HOM05D004736 ORTHO05D006424 5.1e-06 57.4 104 29.8
HPP92_003388 Vanilla planifolia HOM05D004736 ORTHO05D006424 5.1e-06 57.4 104 29.8
Lsat_1_v5_gn_4_36321 Lactuca sativa HOM05D003261 ORTHO05D004230 8.7e-06 56.6 147 29.3
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 8.7e-06 56.6 220 25.0
Hund25080 Selenicereus undatus HOM05D001335 ORTHO05D001184 8.7e-06 56.6 218 26.1


User provided reference genes

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