Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 0.0e+00 1109.4 541 100.0
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 3.5e-305 1050.8 541 94.6
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 1.1e-303 1045.8 541 94.1
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 2.1e-302 1041.6 541 93.9
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 4.1e-293 1010.7 530 91.5
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 1.5e-279 965.7 540 87.4
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 1.2e-276 956.1 539 85.2
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 2.2e-275 951.8 540 85.2
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 3.8e-275 951.0 531 85.9
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 1.1e-274 949.5 543 84.2
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 3.6e-273 944.5 545 85.1
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 1.5e-271 939.1 535 83.9
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 2.0e-271 938.7 536 83.8
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 4.4e-271 937.6 539 83.5
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 7.5e-271 936.8 540 84.4
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 1.7e-270 935.6 531 85.1
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 3.7e-270 934.5 531 84.7
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 3.7e-270 934.5 540 83.3
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 4.8e-270 934.1 536 84.1
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.8e-269 932.2 544 82.5
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 1.8e-269 932.2 536 83.4
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 9.1e-269 929.9 541 82.6
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 1.6e-268 929.1 531 83.4
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 3.5e-268 927.9 536 83.6
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 4.5e-268 927.5 533 83.5
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 5.9e-268 927.2 533 84.2
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 7.7e-268 926.8 533 83.7
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 1.3e-267 926.0 541 83.2
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 1.3e-267 926.0 533 83.3
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 1.3e-267 926.0 561 80.2
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 1.3e-267 926.0 536 83.8
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 1.3e-267 926.0 533 84.2
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 1.7e-267 925.6 533 83.3
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 2.2e-267 925.2 556 81.3
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 2.9e-267 924.9 532 84.2
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 3.8e-267 924.5 533 83.9
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 6.5e-267 923.7 537 83.8
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 1.1e-266 922.9 535 82.6
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 3.2e-266 921.4 570 78.8
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 3.2e-266 921.4 537 82.7
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 4.2e-266 921.0 525 84.6
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 4.2e-266 921.0 541 83.2
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 5.5e-266 920.6 536 83.4
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 5.5e-266 920.6 536 83.0
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 7.2e-266 920.2 544 82.7
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 1.6e-265 919.1 539 83.5
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 1.6e-265 919.1 533 82.4
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 2.7e-265 918.3 513 84.4
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 8.0e-265 916.8 525 83.8
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 1.4e-264 916.0 549 81.4
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.8e-264 915.6 557 79.5
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 1.2e-263 912.9 542 83.0
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 5.7e-263 910.6 533 82.0
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 9.8e-263 909.8 541 82.3
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 9.8e-263 909.8 592 76.4
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 1.3e-262 909.4 542 81.7
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 5.4e-261 904.0 529 83.4
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 7.0e-261 903.7 535 81.7
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 9.1e-261 903.3 532 82.7
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 3.5e-260 901.4 539 81.1
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 4.5e-260 901.0 590 76.4
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 7.7e-260 900.2 533 82.7
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 1.3e-259 899.4 535 80.2
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 1.3e-259 899.4 556 79.7
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 1.1e-258 896.3 540 81.3
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 3.6e-257 891.3 548 80.3
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 6.1e-257 890.6 536 79.9
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 1.0e-256 889.8 536 79.7
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 5.2e-256 887.5 537 80.3
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 5.2e-256 887.5 537 80.3
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 8.8e-256 886.7 540 79.6
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 1.2e-255 886.3 533 80.5
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 2.0e-255 885.6 533 80.5
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 2.0e-255 885.6 536 80.4
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 3.4e-255 884.8 535 81.5
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 4.4e-255 884.4 532 79.9
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 5.7e-255 884.0 539 79.6
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 3.1e-253 878.2 524 81.5
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 7.0e-253 877.1 533 80.5
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 7.7e-252 873.6 544 78.7
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 1.7e-251 872.5 541 79.7
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 2.3e-251 872.1 535 79.6
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 3.8e-251 871.3 498 82.7
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 1.9e-250 869.0 525 80.0
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 1.9e-250 869.0 531 80.2
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 1.2e-249 866.3 531 79.7
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 1.8e-248 862.4 532 80.1
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 2.3e-248 862.1 469 86.8
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 5.2e-248 860.9 536 77.8
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 1.2e-247 859.8 537 76.7
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 2.4e-245 852.0 538 78.3
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 1.5e-242 842.8 537 77.1
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 8.0e-241 837.0 488 80.9
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 1.8e-240 835.9 547 76.6
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 4.0e-240 834.7 559 73.0
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.5e-239 832.8 530 75.7
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 8.3e-238 827.0 545 75.6
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 8.3e-238 827.0 560 74.1
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 4.1e-237 824.7 560 74.1
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 5.4e-237 824.3 545 75.6
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 9.2e-237 823.5 437 91.8
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 1.9e-234 815.8 542 74.2
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 1.1e-232 810.1 537 74.7
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 2.2e-230 802.4 537 73.7
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 4.1e-221 771.5 477 76.3
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 5.6e-218 761.1 513 72.3
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 2.1e-217 759.2 536 69.8
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 2.0e-215 752.7 426 82.4
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 1.1e-213 746.9 398 86.4
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 7.8e-212 740.7 461 77.0
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 4.8e-193 678.3 420 79.5
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 6.9e-192 674.5 398 78.9
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 2.9e-190 669.1 499 68.9
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 1.6e-188 663.3 332 91.9
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 2.0e-162 576.6 408 72.5
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 7.2e-157 558.1 283 90.5
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 1.8e-155 553.5 488 57.0
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 6.7e-155 551.6 477 57.4
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 2.4e-152 543.1 395 68.9
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 8.0e-140 501.5 346 70.5
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 4.3e-133 479.2 463 52.9
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 2.8e-132 476.5 451 53.2
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 2.8e-132 476.5 364 62.9
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 5.9e-127 458.8 335 69.6
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 1.5e-106 391.0 270 74.8
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 7.8e-95 352.1 230 77.0
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 1.5e-93 347.8 182 92.3
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 7.3e-93 345.5 181 87.8
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 5.6e-77 292.7 172 79.7
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 1.5e-58 231.5 135 77.8
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 4.4e-45 186.8 115 78.3
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 4.8e-44 183.3 102 81.4
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 3.1e-35 154.1 80 88.8
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 3.7e-28 130.6 67 88.1
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 1.2e-21 109.0 58 84.5
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 3.4e-21 107.5 60 80.0
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 3.4e-21 107.5 60 80.0
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 2.4e-19 101.3 53 86.8
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 5.9e-18 96.7 50 84.0
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 4.4e-13 80.5 78 51.3


User provided reference genes

Program Settings