Gene: Sopen10g030650

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g030650
  • Transcript Identifier Sopen10g030650.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 78241243-78245463 : negative

Gene Family Information

  • ID HOM05D001054
  • #Genes/#Species 576/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g030650.1

Descriptions

  • Description Ribonuclease III family protein | FUNCTIONS IN: RNA binding, ribonuclease III activity | INVOLVED IN: RNA processing | LOCATED IN: chloroplast | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Ribonuclease III | BEST Arabidopsis thaliana protein match is: unknown protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
IEA
InterProRNA processing
GO:0016075
IEA
InterProrRNA catabolic process
GO:0000373
ISO
PLAZA Integrative OrthologyGroup II intron splicing Zm00001eb150280
GO:0042254
ISO
PLAZA Integrative Orthologyribosome biogenesis Zm00001eb150280
GO:0006468
ISO
PLAZA Homology (enrichment)protein phosphorylation HOM05D001054

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004525
IEA
InterProribonuclease III activity
GO:0003723
IEA
InterProRNA binding
GO:0005524
ISO
PLAZA Homology (enrichment)ATP binding HOM05D001054
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Zm00001eb150280
GO:0003725
ISO
PLAZA Integrative Orthologydouble-stranded RNA binding Zm00001eb150280
GO:0003727
ISO
PLAZA Integrative Orthologysingle-stranded RNA binding Zm00001eb150280
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G37510
GO:0004672
ISO
PLAZA Homology (enrichment)protein kinase activity HOM05D001054

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma Zm00001eb150280

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036389 Ribonuclease III, endonuclease domain superfamily
IPR000999 Ribonuclease III domain
IPR011907 Ribonuclease III
Mapman id Description
16.11.4.1.1.2 RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.group-II intron splicing.ribonuclease (RNC1)