Gene: PGR004G0129
General Information
Structural Information
- Species Punica granatum
- Gene Identifier PGR004G0129
- Transcript Identifier PGR004G0129.01
- Gene Type Coding gene
- Location NC_045131.1 : 5980552-5984345 : negative
Gene Family Information
- ID HOM05D001054
- #Genes/#Species 576/100
- Phylogenetic origin
- ID ORTHO05D007110
- #Genes/#Species 134/93
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- pid XP_031397484.1
- name LOC116208280
- name XM_031541624.1
- id gene-LOC116208280
- uniprot A0A2I0IB58
Descriptions
- product ribonuclease III domain-containing protein RNC1, chloroplastic
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006468 | ISO | PLAZA Homology (enrichment) | protein phosphorylation | HOM05D001054 |
| GO:0042254 | ISO | PLAZA Integrative Orthology | ribosome biogenesis | Zm00001eb150280 |
| GO:0000373 | ISO | PLAZA Integrative Orthology | Group II intron splicing | Zm00001eb150280 |
| GO:0016075 | IEA | GOA Database | rRNA catabolic process | |
| GO:0016075 | IEA | InterPro | rRNA catabolic process | |
| GO:0006396 | IEA | GOA Database | RNA processing | |
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0090502 | IEA | GOA Database | RNA phosphodiester bond hydrolysis, endonucleolytic | |
| GO:0090501 | IEA | GOA Database | RNA phosphodiester bond hydrolysis |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004672 | ISO | PLAZA Homology (enrichment) | protein kinase activity | HOM05D001054 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT4G37510 |
| GO:0003727 | ISO | PLAZA Integrative Orthology | single-stranded RNA binding | Zm00001eb150280 |
| GO:0003725 | ISO | PLAZA Integrative Orthology | double-stranded RNA binding | Zm00001eb150280 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | Zm00001eb150280 |
| GO:0005524 | ISO | PLAZA Homology (enrichment) | ATP binding | HOM05D001054 |
| GO:0004525 | IEA | GOA Database | ribonuclease III activity | |
| GO:0004525 | IEA | InterPro | ribonuclease III activity | |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | Zm00001eb150280 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.11.4.1.1.2 | RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.group-II intron splicing.ribonuclease (RNC1) |