Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2922.1 1499 100.0
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2476.0 1499 84.5
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2473.4 1500 84.0
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2461.8 1499 82.7
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2459.9 1500 83.3
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2457.6 1499 83.3
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2456.4 1500 83.7
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2452.2 1502 83.2
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2450.6 1500 83.4
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2424.4 1500 81.3
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2422.1 1500 81.6
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2412.5 1500 82.5
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2398.6 1496 82.0
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2395.9 1503 81.4
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2392.8 1500 81.8
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2384.4 1500 80.8
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2378.6 1501 80.4
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2378.2 1505 80.5
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2371.7 1500 79.9
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2362.4 1500 79.8
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2353.9 1537 78.3
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2352.4 1488 80.9
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2352.4 1491 79.8
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2352.4 1500 79.9
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2348.2 1500 78.5
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2347.4 1500 78.5
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2344.3 1500 78.9
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2341.2 1500 79.0
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2340.8 1500 78.4
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2340.5 1501 80.2
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2338.1 1500 79.1
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2333.5 1501 78.5
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2332.8 1500 79.0
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2331.6 1501 79.6
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2327.4 1500 77.8
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2325.4 1501 78.2
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2322.4 1491 78.4
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2317.3 1497 77.9
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2317.3 1502 79.1
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2310.0 1502 78.2
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2305.0 1558 76.6
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2298.1 1537 76.3
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2290.8 1500 77.1
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2284.6 1496 77.3
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2271.5 1492 76.6
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2263.8 1503 77.3
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2260.3 1573 74.6
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2254.9 1500 76.0
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2254.6 1493 77.1
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2248.8 1499 76.6
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2247.6 1500 76.7
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2239.5 1500 76.3
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2236.1 1454 79.0
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2234.5 1490 76.8
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2231.1 1499 76.0
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2226.1 1490 76.7
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2218.0 1490 74.8
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2218.0 1495 76.5
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2214.1 1499 74.4
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2210.3 1500 74.3
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2205.6 1500 75.2
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2202.2 1500 74.5
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 2175.6 1500 74.5
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2163.3 1496 75.3
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2159.0 1497 74.7
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2157.5 1496 74.5
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2157.1 1558 72.3
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2155.9 1500 73.7
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2153.3 1496 74.1
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2142.1 1496 74.2
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2138.6 1497 74.1
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2136.7 1507 74.0
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2134.0 1497 74.1
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2133.6 1496 73.6
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 2132.8 1491 73.2
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2132.8 1502 72.8
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2130.5 1507 73.7
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2126.7 1497 74.1
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2123.2 1504 73.8
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2122.1 1505 73.8
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2119.7 1495 72.8
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2119.4 1507 73.5
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2119.4 1507 73.2
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2119.0 1508 73.5
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2115.5 1493 73.3
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2100.9 1308 82.0
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2099.3 1497 72.3
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2098.6 1485 72.5
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2093.2 1311 81.9
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 2091.2 1309 81.7
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2090.1 1499 71.9
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 2072.4 1483 72.8
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 2059.3 1598 69.6
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 2056.2 1465 72.6
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2053.1 1579 68.6
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2030.4 1279 80.6
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1971.4 1505 68.5
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1947.9 1395 74.3
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1917.1 1306 76.2
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1909.8 1228 80.1
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1909.8 1483 66.6
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1896.7 1490 65.1
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1873.6 1377 71.5
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1836.2 1447 67.2
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1793.9 1443 63.9
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1791.5 1675 59.0
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1644.0 990 83.3
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1632.5 1521 56.7
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1612.4 1528 57.1
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1515.7 1425 60.3
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1484.9 1087 71.2
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1417.5 1218 60.8
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1416.0 1380 57.9
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1372.5 1315 56.6
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1358.2 1380 55.9
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1167.5 739 81.7
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1154.4 1286 53.6
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1100.9 754 74.9
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.0e-311 1073.9 849 65.0
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 3.6e-267 926.0 781 64.3
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 3.2e-255 886.3 928 56.5
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 3.3e-252 876.3 717 64.9
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 5.0e-240 835.9 581 71.4
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 1.0e-213 748.4 614 64.0
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.1e-207 728.4 598 65.2
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 5.5e-199 699.5 900 47.4
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 5.8e-188 662.9 370 86.5
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 1.1e-178 632.1 442 76.5
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.8e-173 614.8 749 47.5
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 3.7e-171 607.1 481 69.2
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 6.4e-163 579.7 477 65.2
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 1.1e-141 509.2 582 51.9
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 9.0e-125 453.0 776 39.7
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 4.1e-101 374.4 1585 27.8
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 1.6e-100 372.5 1741 26.0
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 1.0e-96 359.8 218 82.6
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 9.8e-95 353.2 447 47.9
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.6e-92 345.9 350 56.9
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 3.1e-85 321.6 1613 25.0
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.9e-78 298.5 224 67.0
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.7e-75 289.3 230 63.9
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 4.3e-74 284.6 241 64.3
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 1.4e-72 279.6 155 81.3
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 2.6e-71 275.4 152 83.6
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 3.7e-70 271.6 272 57.7
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 2.3e-67 262.3 195 66.7
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 1.8e-48 199.5 102 90.2
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 3.5e-44 185.3 190 54.2
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 6.0e-44 184.5 193 57.5
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 9.9e-39 167.2 159 54.1
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 3.8e-38 165.2 218 50.0
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 1.6e-36 159.8 130 61.5
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.3e-34 151.8 344 35.2
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 6.9e-32 144.4 118 62.7
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 7.9e-28 131.0 107 64.5
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 2.3e-27 129.4 96 67.7
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 1.3e-25 123.6 100 68.0
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 3.7e-25 122.1 56 94.6
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 4.5e-23 115.2 67 79.1
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.7e-22 113.2 65 76.9
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 4.9e-22 111.7 351 27.9
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.4e-16 92.8 141 41.1
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.4e-16 92.8 53 86.8
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.4e-16 92.8 53 86.8
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.5e-15 90.1 70 61.4
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 4.5e-15 88.6 112 49.1
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 1.3e-09 70.5 34 88.2
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 4.8e-09 68.6 50 68.0
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 1.8e-08 66.6 40 77.5
Migut.M00179 Erythranthe guttata HOM05D001486 ORTHO05D190146 8.5e-06 57.8 123 35.0


User provided reference genes

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