Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 3.1e-282 974.5 518 100.0
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 1.6e-222 776.2 447 81.9
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 5.2e-221 771.2 447 81.4
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 1.7e-219 766.1 424 84.0
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 8.3e-219 763.8 416 84.6
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 8.3e-219 763.8 447 82.1
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 2.8e-214 748.8 423 82.0
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 6.1e-214 747.7 421 83.6
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 6.1e-214 747.7 455 79.1
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 5.2e-213 744.6 438 80.4
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 1.2e-212 743.4 424 82.8
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 3.4e-212 741.9 417 81.8
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 7.5e-212 740.7 417 83.5
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 9.8e-212 740.3 423 82.0
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 1.3e-211 740.0 420 81.7
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.3e-211 740.0 447 79.6
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 1.3e-211 740.0 423 82.7
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 1.7e-211 739.6 422 82.2
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 4.9e-211 738.0 420 83.1
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 6.4e-211 737.6 436 81.0
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 6.4e-211 737.6 433 81.1
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 1.1e-210 736.9 434 81.6
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 3.2e-210 735.3 423 81.8
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 4.1e-210 734.9 416 82.9
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 5.4e-210 734.6 416 82.7
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 1.2e-209 733.4 427 81.0
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.2e-209 733.4 429 80.4
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.0e-209 732.6 436 80.7
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.0e-209 732.6 424 83.5
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 3.5e-209 731.9 436 80.7
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 7.8e-209 730.7 417 82.0
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 1.3e-208 729.9 431 79.4
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 1.3e-208 729.9 436 78.0
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 2.3e-208 729.2 429 80.0
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 6.6e-208 727.6 421 82.7
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 1.9e-207 726.1 453 78.1
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 3.3e-207 725.3 438 77.9
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 1.2e-206 723.4 439 77.9
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 2.8e-206 722.2 439 77.7
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 3.6e-206 721.8 418 82.1
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 4.7e-206 721.5 424 80.4
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 8.0e-206 720.7 435 77.7
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 1.4e-205 719.9 422 80.6
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 1.8e-205 719.5 443 77.7
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 1.8e-205 719.5 437 78.3
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.3e-205 719.2 427 80.1
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.3e-205 719.2 427 80.1
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 2.3e-205 719.2 444 77.5
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 5.2e-205 718.0 424 80.0
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 8.9e-205 717.2 416 82.2
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 1.2e-204 716.8 437 78.5
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 2.6e-204 715.7 435 79.3
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 1.3e-203 713.4 423 79.4
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 2.2e-203 712.6 471 72.6
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 1.4e-202 709.9 474 73.4
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 6.8e-197 691.0 450 76.0
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 6.8e-197 691.0 437 75.1
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 1.2e-196 690.3 408 80.4
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 5.8e-196 688.0 473 71.2
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 9.8e-196 687.2 386 83.9
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 1.3e-195 686.8 456 74.6
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 4.9e-195 684.9 421 76.0
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 6.4e-195 684.5 421 79.1
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 4.6e-193 678.3 422 77.0
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 1.3e-192 676.8 425 76.7
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 2.3e-192 676.0 448 74.1
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 2.5e-191 672.5 442 75.3
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 3.3e-191 672.2 416 78.1
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 4.3e-191 671.8 442 75.3
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 2.1e-190 669.5 433 74.8
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 1.4e-189 666.8 426 76.3
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 4.0e-189 665.2 446 72.9
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 5.4e-186 654.8 419 74.7
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 7.8e-185 651.0 418 73.2
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 3.0e-184 649.0 350 86.9
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 5.6e-183 644.8 420 73.3
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 2.1e-182 642.9 445 69.9
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 6.2e-182 641.3 419 73.0
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 1.4e-181 640.2 433 71.4
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 5.2e-181 638.3 376 79.3
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 8.9e-181 637.5 435 71.0
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 1.2e-180 637.1 440 69.5
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 1.5e-180 636.7 416 73.3
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 4.4e-180 635.2 396 78.3
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 4.4e-180 635.2 425 71.8
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 5.8e-180 634.8 432 71.3
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 3.8e-179 632.1 432 71.1
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 4.9e-179 631.7 420 71.9
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 1.9e-178 629.8 416 73.1
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 2.4e-178 629.4 421 72.0
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 3.2e-178 629.0 434 69.1
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.3e-176 623.6 400 75.8
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 6.6e-176 621.3 423 71.4
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.1e-175 620.5 433 69.7
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 1.1e-173 614.0 423 70.7
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 1.1e-173 614.0 429 70.2
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.4e-173 613.6 421 69.1
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 9.9e-172 607.4 420 70.7
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.3e-171 607.1 418 69.6
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 3.9e-168 595.5 386 73.6
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 5.1e-168 595.1 390 72.8
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 3.6e-166 589.0 429 66.7
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 6.2e-166 588.2 397 72.5
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 7.1e-162 574.7 382 73.6
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 1.1e-159 567.4 315 84.1
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 9.6e-159 564.3 351 76.9
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 3.7e-158 562.4 458 63.5
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 1.1e-157 560.8 315 81.6
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 7.2e-146 521.5 319 76.8
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 5.5e-138 495.4 335 71.6
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 2.5e-130 469.9 310 72.9
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 1.4e-128 464.2 293 74.4
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 3.9e-128 462.6 446 58.3
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 1.7e-126 457.2 379 59.6
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 2.8e-126 456.4 325 68.6
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 4.7e-121 439.1 469 50.1
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 2.8e-118 429.9 364 59.1
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 8.0e-113 411.8 326 62.9
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 3.7e-110 402.9 325 56.9
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 8.8e-104 381.7 218 79.4
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 1.9e-98 364.0 191 85.3
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 1.1e-93 348.2 433 46.2
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 3.7e-86 323.2 230 70.4
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 7.0e-85 318.9 259 62.5
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 4.3e-66 256.5 258 55.0
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 2.6e-55 220.7 171 68.4
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 3.7e-49 200.3 114 80.7
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 1.9e-45 188.0 136 69.9
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 2.4e-45 187.6 166 63.3
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 6.0e-36 156.4 113 74.3
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 5.7e-34 149.8 316 32.9
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 2.5e-29 134.4 275 34.9
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 3.6e-28 130.6 77 76.6
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 1.0e-27 129.0 79 78.5
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 2.5e-21 107.8 211 33.2
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 8.8e-19 99.4 80 61.2
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 7.0e-16 89.7 52 78.8
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 4.8e-09 67.0 29 93.1
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 4.1e-08 63.9 85 45.9
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 7.0e-08 63.2 68 48.5
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 5.0e-06 57.0 28 85.7


User provided reference genes

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