Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 2.4e-68 262.7 180 100.0
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 4.8e-61 238.4 183 89.1
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 7.4e-54 214.5 179 73.7
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 9.7e-54 214.2 161 80.7
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 2.2e-53 213.0 180 82.2
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 2.8e-53 212.6 158 84.2
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 6.3e-53 211.5 160 81.9
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 8.2e-53 211.1 179 78.8
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 1.8e-52 209.9 165 70.3
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 2.4e-52 209.5 158 82.9
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 4.1e-52 208.8 162 75.9
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 4.1e-52 208.8 157 84.1
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 5.3e-52 208.4 164 73.8
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 5.3e-52 208.4 164 73.8
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 6.9e-52 208.0 182 71.4
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 1.2e-51 207.2 160 78.8
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 1.2e-51 207.2 160 79.4
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 1.2e-51 207.2 182 80.2
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 1.2e-51 207.2 182 79.7
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 1.2e-51 207.2 164 73.2
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 2.6e-51 206.1 167 76.6
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 3.4e-51 205.7 160 80.6
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 4.5e-51 205.3 164 80.5
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 5.9e-51 204.9 167 77.2
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 5.9e-51 204.9 167 77.8
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 5.9e-51 204.9 167 77.8
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 5.9e-51 204.9 159 80.5
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 1.0e-50 204.1 167 77.2
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 1.0e-50 204.1 163 81.6
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.3e-50 203.8 163 78.5
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 1.7e-50 203.4 184 80.4
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.2e-50 203.0 163 71.8
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.2e-50 203.0 186 74.2
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 2.9e-50 202.6 185 74.1
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.9e-50 202.6 167 77.2
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 2.9e-50 202.6 164 75.6
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 5.0e-50 201.8 155 80.6
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 5.0e-50 201.8 155 80.6
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 5.0e-50 201.8 165 70.3
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 6.5e-50 201.4 183 72.7
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 8.5e-50 201.1 182 79.7
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 8.5e-50 201.1 183 73.8
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.1e-49 200.7 165 75.2
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 1.1e-49 200.7 110 88.2
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 1.1e-49 200.7 163 76.7
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.1e-49 200.7 155 80.0
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.1e-49 200.7 155 80.0
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 1.1e-49 200.7 155 80.0
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 1.1e-49 200.7 183 73.2
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 1.4e-49 200.3 185 69.7
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.4e-49 200.3 155 80.0
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 1.9e-49 199.9 181 74.6
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 1.9e-49 199.9 162 78.4
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 2.5e-49 199.5 160 80.0
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 2.5e-49 199.5 166 74.1
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 2.5e-49 199.5 166 74.1
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.5e-49 199.5 165 76.4
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 3.2e-49 199.1 162 77.2
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 3.2e-49 199.1 162 77.2
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 4.2e-49 198.7 181 79.0
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 4.2e-49 198.7 164 68.9
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 5.5e-49 198.4 161 72.7
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 9.4e-49 197.6 183 72.1
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 9.4e-49 197.6 171 69.6
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 9.4e-49 197.6 160 85.0
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 1.2e-48 197.2 160 72.5
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 1.6e-48 196.8 182 78.6
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 1.6e-48 196.8 163 77.9
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 1.6e-48 196.8 188 76.6
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 1.6e-48 196.8 181 77.9
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 1.6e-48 196.8 160 76.9
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 2.1e-48 196.4 164 78.7
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 2.7e-48 196.1 164 73.2
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 4.6e-48 195.3 158 82.9
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 6.1e-48 194.9 152 83.6
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 6.1e-48 194.9 166 77.1
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 6.1e-48 194.9 164 77.4
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 6.1e-48 194.9 161 68.3
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 6.1e-48 194.9 153 74.5
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 7.9e-48 194.5 150 84.0
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 7.9e-48 194.5 161 74.5
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 7.9e-48 194.5 161 74.5
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 7.9e-48 194.5 160 76.2
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 7.9e-48 194.5 160 77.5
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 7.9e-48 194.5 109 80.7
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 1.0e-47 194.1 166 73.5
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 1.0e-47 194.1 166 73.5
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.0e-47 194.1 151 82.8
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 1.4e-47 193.7 178 79.2
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 1.4e-47 193.7 158 81.6
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.4e-47 193.7 109 80.7
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 1.8e-47 193.4 183 79.2
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 1.8e-47 193.4 108 86.1
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 1.8e-47 193.4 152 80.3
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 1.8e-47 193.4 161 71.4
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 2.3e-47 193.0 166 79.5
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 2.3e-47 193.0 111 82.9
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 2.3e-47 193.0 164 67.1
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 3.9e-47 192.2 163 74.8
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 3.9e-47 192.2 162 72.2
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.9e-47 192.2 151 76.8
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 5.1e-47 191.8 161 77.6
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 6.7e-47 191.4 163 69.3
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 6.7e-47 191.4 157 80.3
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 6.7e-47 191.4 157 80.3
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 6.7e-47 191.4 161 73.3
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 6.7e-47 191.4 157 79.0
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 6.7e-47 191.4 163 76.7
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 8.8e-47 191.0 164 79.9
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 8.8e-47 191.0 180 78.9
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 8.8e-47 191.0 160 78.8
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 1.1e-46 190.7 166 72.9
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 1.1e-46 190.7 160 75.6
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 1.1e-46 190.7 159 79.9
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 1.5e-46 190.3 127 84.3
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 2.0e-46 189.9 151 82.8
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 2.6e-46 189.5 164 76.2
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 2.6e-46 189.5 164 76.2
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 2.6e-46 189.5 164 76.2
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 2.6e-46 189.5 164 75.0
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 4.4e-46 188.7 166 73.5
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 4.4e-46 188.7 107 85.0
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 4.4e-46 188.7 155 79.4
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 1.3e-45 187.2 162 69.1
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 1.3e-45 187.2 106 84.9
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 1.7e-45 186.8 164 75.6
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 2.8e-45 186.0 161 70.8
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 8.2e-45 184.5 162 72.2
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 1.1e-44 184.1 162 77.8
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 1.4e-44 183.7 110 80.9
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 2.4e-44 183.0 157 82.2
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 4.1e-44 182.2 163 73.6
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 4.1e-44 182.2 165 70.3
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 9.1e-44 181.0 108 76.9
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 9.1e-44 181.0 151 79.5
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 9.1e-44 181.0 151 79.5
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 2.0e-43 179.9 155 74.2
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 2.0e-43 179.9 196 63.3
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.7e-42 176.8 155 72.9
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 3.8e-42 175.6 94 86.2
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 5.0e-42 175.3 95 87.4
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 1.1e-41 174.1 109 74.3
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 1.4e-41 173.7 91 87.9
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.9e-41 173.3 151 74.2
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.9e-41 173.3 165 66.7
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 2.1e-40 169.9 90 88.9
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 3.6e-40 169.1 162 71.0
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 8.8e-39 164.5 106 78.3
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.2e-35 154.1 81 85.2
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 6.5e-34 148.3 108 61.1
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 2.1e-32 143.3 127 60.6
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 1.4e-31 140.6 129 66.7
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 3.3e-30 136.0 80 77.5
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 1.6e-27 127.1 100 67.0
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 8.5e-26 121.3 60 91.7
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 1.6e-24 117.1 76 65.8
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 4.4e-22 109.0 93 58.1
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 6.3e-21 105.1 57 87.7
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 6.3e-21 105.1 94 51.1
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 3.8e-18 95.9 108 50.9
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 8.6e-18 94.7 50 80.0
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 9.5e-17 91.3 117 47.9
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 2.3e-15 86.7 117 47.9
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 1.6e-11 73.9 46 73.9
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 2.7e-11 73.2 44 77.3
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 2.7e-11 73.2 44 77.3
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 2.7e-11 73.2 47 76.6
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 2.3e-10 70.1 44 75.0
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 2.3e-10 70.1 44 75.0
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 2.3e-10 70.1 44 75.0
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 5.0e-10 68.9 40 82.5
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 3.0e-07 59.7 38 71.1


User provided reference genes

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