Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 5.2e-65 250.8 115 100.0
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 91.3
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 88.7
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 87.8
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 8.1e-58 226.9 115 87.8
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 87.8
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 1.4e-57 226.1 115 87.8
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 89.6
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 2.4e-57 225.3 115 87.0
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 87.0
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 4.0e-57 224.6 115 87.0
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 4.0e-57 224.6 114 86.8
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 5.2e-57 224.2 115 87.8
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 5.2e-57 224.2 115 87.0
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 5.2e-57 224.2 115 86.1
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 5.2e-57 224.2 115 86.1
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 5.2e-57 224.2 115 87.0
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 6.8e-57 223.8 115 86.1
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 8.9e-57 223.4 115 87.0
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 8.9e-57 223.4 115 86.1
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 8.9e-57 223.4 115 85.2
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 8.9e-57 223.4 115 87.0
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 1.2e-56 223.0 115 86.1
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 1.2e-56 223.0 115 86.1
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 1.2e-56 223.0 115 87.0
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 85.2
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 87.0
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 87.0
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 87.0
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 85.2
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 87.0
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 87.0
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 87.0
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 87.8
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 2.0e-56 222.2 115 86.1
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 2.0e-56 222.2 115 85.2
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 2.6e-56 221.9 115 86.1
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 2.6e-56 221.9 115 86.1
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 2.6e-56 221.9 115 86.1
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 3.4e-56 221.5 115 86.1
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 3.4e-56 221.5 115 87.0
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 4.4e-56 221.1 115 86.1
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 4.4e-56 221.1 115 84.3
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 5.8e-56 220.7 115 87.0
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 5.8e-56 220.7 115 85.2
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 7.6e-56 220.3 115 86.1
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 7.6e-56 220.3 115 86.1
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 7.6e-56 220.3 115 87.0
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 9.9e-56 219.9 115 85.2
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 1.3e-55 219.5 115 85.2
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 1.3e-55 219.5 115 84.3
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.3e-55 219.5 115 84.3
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 1.7e-55 219.2 115 84.3
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 2.2e-55 218.8 115 84.3
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 2.2e-55 218.8 115 84.3
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 2.2e-55 218.8 115 84.3
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 2.2e-55 218.8 115 83.5
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 2.2e-55 218.8 115 84.3
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 2.9e-55 218.4 115 82.6
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 2.9e-55 218.4 115 86.1
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 3.8e-55 218.0 115 84.3
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 3.8e-55 218.0 115 84.3
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 3.8e-55 218.0 114 85.1
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 4.9e-55 217.6 115 84.3
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 6.4e-55 217.2 115 86.1
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 8.4e-55 216.9 115 84.3
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.1e-54 216.5 115 83.5
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.1e-54 216.5 115 83.5
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-54 216.5 115 83.5
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 1.1e-54 216.5 115 83.5
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 1.1e-54 216.5 115 83.5
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 1.1e-54 216.5 115 83.5
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 1.1e-54 216.5 115 83.5
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 1.4e-54 216.1 115 82.6
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.9e-54 215.7 115 83.5
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.9e-54 215.7 115 83.5
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 3.2e-54 214.9 115 83.5
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 3.2e-54 214.9 115 83.5
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 3.2e-54 214.9 115 83.5
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 3.2e-54 214.9 115 81.7
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 4.2e-54 214.5 115 82.6
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 4.2e-54 214.5 115 81.7
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 7.1e-54 213.8 115 82.6
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 7.1e-54 213.8 115 82.6
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 1.2e-53 213.0 115 82.6
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 1.2e-53 213.0 135 74.8
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 2.7e-53 211.8 115 80.9
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 3.5e-53 211.5 115 82.6
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 4.6e-53 211.1 134 74.6
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.3e-52 209.5 115 81.7
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 1.3e-52 209.5 115 81.7
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 3.9e-52 208.0 115 80.9
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 3.3e-51 204.9 115 77.4
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 7.3e-51 203.8 105 86.7
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 2.1e-50 202.2 112 83.0
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 2.1e-50 202.2 112 83.0
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 3.6e-50 201.4 115 78.3
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.8e-49 199.1 105 83.8
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.8e-49 199.1 105 83.8
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 2.4e-49 198.7 128 75.0
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 1.5e-48 196.1 105 82.9
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 2.0e-48 195.7 112 77.7
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 2.6e-48 195.3 115 74.8
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 4.4e-48 194.5 115 73.9
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 5.8e-48 194.1 115 75.7
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 7.6e-48 193.7 105 81.9
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 7.6e-48 193.7 105 81.9
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 1.7e-47 192.6 113 76.1
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 1.7e-47 192.6 113 76.1
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 2.9e-47 191.8 115 70.4
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 3.8e-47 191.4 105 81.9
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 1.9e-46 189.1 114 71.9
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 5.4e-46 187.6 115 69.6
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 7.9e-45 183.7 112 72.3
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 1.0e-44 183.3 112 72.3
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 1.0e-44 183.3 112 72.3
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 2.3e-44 182.2 98 85.7
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 5.1e-44 181.0 115 68.7
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.1e-43 179.9 114 67.5
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.5e-43 179.5 114 68.4
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.1e-41 173.3 114 66.7
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 2.4e-41 172.2 115 66.1
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 9.0e-41 170.2 180 52.2
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 1.4e-38 162.9 115 67.8
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 1.2e-37 159.8 88 83.0
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.6e-37 159.5 93 77.4
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 3.5e-37 158.3 90 80.0
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 6.0e-37 157.5 83 84.3
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.0e-36 156.8 115 55.7
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 3.0e-36 155.2 88 79.5
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 3.9e-36 154.8 88 80.7
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.1e-35 153.3 82 81.7
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.5e-35 152.9 80 83.8
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.5e-35 152.9 80 83.8
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 2.5e-35 152.1 114 62.3
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 2.5e-35 152.1 81 82.7
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 5.6e-35 151.0 80 83.8
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 2.1e-34 149.1 94 71.3
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 3.7e-34 148.3 80 81.2
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 4.8e-34 147.9 79 82.3
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 4.8e-34 147.9 80 81.2
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 3.1e-33 145.2 81 79.0
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 1.5e-32 142.9 80 78.8
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 2.6e-32 142.1 81 76.5
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 1.3e-31 139.8 84 75.0
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 2.5e-30 135.6 77 81.8
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 7.4e-27 124.0 110 50.0
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 1.2e-24 116.7 111 46.8
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 4.2e-22 108.2 64 78.1
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 2.7e-21 105.5 61 77.0
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 7.4e-19 97.4 114 41.2
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 9.7e-19 97.1 70 62.9
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 2.8e-18 95.5 97 45.4
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 3.7e-18 95.1 114 43.9
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 2.4e-17 92.4 56 73.2
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 4.1e-17 91.7 54 79.6
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 7.7e-16 87.4 116 37.1
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 2.2e-15 85.9 113 42.5
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 1.9e-14 82.8 54 68.5
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 9.4e-14 80.5 49 73.5
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 6.1e-13 77.8 104 37.5
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 5.7e-11 71.2 64 45.3
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 1.7e-10 69.7 112 35.7
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 3.7e-10 68.6 105 35.2
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 5.3e-09 64.7 40 72.5
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 9.1e-09 63.9 112 34.8
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 1.0e-07 60.5 113 27.4
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 1.0e-07 60.5 113 31.9
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 1.3e-07 60.1 112 27.7
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 3.8e-07 58.5 113 29.2
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 6.5e-07 57.8 115 28.7
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 1.1e-06 57.0 112 27.7
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 2.5e-06 55.8 88 34.1
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 3.2e-06 55.5 114 28.9


User provided reference genes

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