Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8954 Trifolium pratense HOM05D003708 ORTHO05D004452 1.6e-91 339.3 168 100.0
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 6.2e-75 284.3 168 84.5
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 2.1e-70 269.2 168 83.9
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 6.3e-67 257.7 162 82.1
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 1.1e-66 256.9 162 77.8
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 2.6e-65 252.3 163 78.5
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 3.8e-64 248.4 162 74.7
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 8.4e-64 247.3 162 74.7
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 1.4e-63 246.5 169 75.7
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 3.9e-61 238.4 169 74.0
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 6.3e-59 231.1 171 70.2
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 1.4e-58 229.9 167 71.9
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 1.8e-58 229.6 168 68.5
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 6.9e-58 227.6 171 72.5
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 9.0e-58 227.3 171 69.0
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 5.9e-57 224.6 156 71.2
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 6.5e-56 221.1 168 69.6
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.4e-55 219.9 173 68.8
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 1.9e-55 219.5 156 70.5
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.9e-55 219.5 156 70.5
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.9e-55 219.5 156 70.5
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.9e-55 219.5 156 70.5
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 9.4e-55 217.2 171 67.3
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 1.2e-54 216.9 168 67.9
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 1.6e-54 216.5 173 67.6
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 2.1e-54 216.1 156 69.9
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 2.7e-54 215.7 169 65.7
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 3.6e-54 215.3 170 66.5
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 7.9e-54 214.2 171 66.7
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 1.0e-53 213.8 171 67.3
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.0e-53 213.8 171 66.1
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 1.4e-53 213.4 169 66.9
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 1.4e-53 213.4 168 67.9
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 1.4e-53 213.4 168 66.1
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 2.3e-53 212.6 168 65.5
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 3.0e-53 212.2 168 66.1
Dinv42045 Davidia involucrata HOM05D003708 ORTHO05D004452 5.1e-53 211.5 170 65.9
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 6.7e-53 211.1 168 66.1
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.5e-52 209.9 173 66.5
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 2.0e-52 209.5 165 67.3
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 2.0e-52 209.5 169 65.7
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 3.3e-52 208.8 171 67.3
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 3.3e-52 208.8 161 67.1
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 4.3e-52 208.4 170 64.1
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 5.7e-52 208.0 169 64.5
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 9.7e-52 207.2 168 64.3
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 1.3e-51 206.8 168 64.9
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 2.2e-51 206.1 174 64.9
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 2.2e-51 206.1 168 66.1
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 3.7e-51 205.3 166 65.7
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 4.8e-51 204.9 171 63.7
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 6.3e-51 204.5 168 63.7
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 8.2e-51 204.1 179 63.1
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 1.4e-50 203.4 173 65.3
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 1.4e-50 203.4 168 63.7
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 1.8e-50 203.0 168 63.7
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 2.4e-50 202.6 152 69.7
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 2.4e-50 202.6 163 68.1
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 4.1e-50 201.8 168 66.7
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 5.3e-50 201.4 164 63.4
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 5.3e-50 201.4 137 72.3
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 9.1e-50 200.7 168 63.1
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 9.1e-50 200.7 171 62.0
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 9.1e-50 200.7 172 65.7
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 1.2e-49 200.3 167 62.9
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 1.5e-49 199.9 168 63.7
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 2.0e-49 199.5 173 63.6
Cpa.g.sc106.11 Carica papaya HOM05D003708 ORTHO05D004452 5.9e-49 198.0 157 64.3
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 7.7e-49 197.6 169 63.3
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 1.0e-48 197.2 170 62.4
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 1.7e-48 196.4 168 63.1
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 1.7e-48 196.4 169 65.7
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 2.2e-48 196.1 169 62.7
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 2.2e-48 196.1 171 63.7
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 2.9e-48 195.7 168 63.1
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 5.0e-48 194.9 170 60.6
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 1.1e-47 193.7 170 61.8
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 1.4e-47 193.4 171 62.0
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 1.4e-47 193.4 171 60.2
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 1.4e-47 193.4 171 60.2
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 1.4e-47 193.4 146 67.1
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 1.4e-47 193.4 171 63.2
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 1.9e-47 193.0 168 60.7
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 1.9e-47 193.0 169 60.9
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 2.5e-47 192.6 168 61.3
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 2.5e-47 192.6 165 63.6
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 4.2e-47 191.8 137 68.6
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 5.5e-47 191.4 152 69.1
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 5.5e-47 191.4 171 62.6
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 7.2e-47 191.0 172 61.0
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 9.4e-47 190.7 171 60.2
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 9.4e-47 190.7 165 61.2
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 3.6e-46 188.7 168 61.9
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 4.7e-46 188.3 169 60.4
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 6.1e-46 188.0 155 63.9
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 7.9e-46 187.6 171 59.6
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 7.9e-46 187.6 170 62.4
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 7.9e-46 187.6 168 62.5
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 7.9e-46 187.6 147 62.6
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 1.0e-45 187.2 171 59.6
Cc00_g28580 Coffea canephora HOM05D003708 ORTHO05D004452 1.0e-45 187.2 167 62.9
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 1.0e-45 187.2 151 64.2
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 1.0e-45 187.2 157 61.8
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 1.4e-45 186.8 181 59.7
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.4e-45 186.8 162 61.7
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 2.3e-45 186.0 173 59.5
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 2.3e-45 186.0 127 73.2
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 3.0e-45 185.7 166 62.0
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 3.0e-45 185.7 157 60.5
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 3.0e-45 185.7 142 69.7
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 3.9e-45 185.3 173 61.3
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 3.9e-45 185.3 181 59.1
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 3.9e-45 185.3 105 81.9
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 5.1e-45 184.9 164 60.4
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 3.3e-44 182.2 155 61.9
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 4.4e-44 181.8 100 84.0
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 7.4e-44 181.0 197 52.3
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 1.3e-43 180.3 169 58.0
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 8.2e-43 177.6 161 60.2
CDE11G0056 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 2.4e-42 176.0 103 78.6
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 9.1e-42 174.1 103 77.7
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 4.5e-41 171.8 115 70.4
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 4.7e-38 161.8 162 55.6
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 4.7e-38 161.8 156 55.1
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 8.8e-37 157.5 158 57.6
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 1.7e-35 153.3 99 67.7
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 2.8e-35 152.5 98 69.4
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 5.3e-34 148.3 145 57.2
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 5.3e-34 148.3 98 67.3
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 7.0e-34 147.9 129 59.7
CBR_g46280 Chara braunii HOM05D003708 ORTHO05D004452 4.5e-33 145.2 124 58.9
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 4.5e-33 145.2 77 90.9
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 1.7e-32 143.3 77 89.6
SEGI_18999 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 3.8e-32 142.1 97 66.0
TAR383G0428 Trochodendron aralioides HOM05D003708 ORTHO05D004452 5.0e-32 141.7 99 64.6
TAR628G0633 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.1e-31 140.6 99 64.6
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 2.5e-31 139.4 77 87.0
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 1.6e-30 136.7 79 88.6
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 2.1e-30 136.3 79 87.3
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 5.7e-28 128.3 98 65.3
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 5.7e-28 128.3 98 65.3
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 7.5e-28 127.9 134 54.5
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 2.2e-27 126.3 127 53.5
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 4.8e-27 125.2 126 54.8
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 9.1e-26 120.9 132 55.3
CSS0044853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 2.7e-25 119.4 161 44.1
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 1.2e-22 110.5 95 54.7
Lj6C687T4 Lonicera japonica HOM05D003708 ORTHO05D004452 2.1e-22 109.8 83 63.9
BcaC04g19188 Brassica carinata HOM05D003708 ORTHO05D004452 5.2e-21 105.1 116 53.4
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 8.3e-19 97.8 98 54.1
Lj3C650T5 Lonicera japonica HOM05D003708 ORTHO05D004452 5.6e-15 85.1 65 64.6
Medtr5g022680 Medicago truncatula HOM05D003708 ORTHO05D004452 5.9e-09 65.1 51 58.8
Lj3C651T3 Lonicera japonica HOM05D003708 ORTHO05D004452 7.8e-09 64.7 48 62.5
BcaB01g05444 Brassica carinata HOM05D003708 ORTHO05D004452 8.6e-08 61.2 114 36.8


User provided reference genes

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