Gene: AT5G11880

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G11880
  • Transcript Identifier AT5G11880.1
  • Gene Type Coding gene
  • Location Chr5 : 3827806-3829942 : negative

Gene Family Information

  • ID HOM05D003708
  • #Genes/#Species 185/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G11880.1
  • uniprot Q94A94

Descriptions

  • Description Pyridoxal-dependent decarboxylase family protein
  • Computational description Pyridoxal-dependent decarboxylase family protein; FUNCTIONS IN: diaminopimelate decarboxylase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: chloroplast; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Alanine racemase/group IV decarboxylase, C-terminal (InterPro:IPR009006), Ornithine/DAP/Arg decarboxylase (InterPro:IPR000183), Orn/DAP/Arg decarboxylase 2, N-terminal (InterPro:IPR022644), Orn/DAP/Arg decarboxylase 2, C-terminal (InterPro:IPR022643), Diaminopimelate decarboxylase (InterPro:IPR002986), Orn/DAP/Arg decarboxylase 2, conserved site (InterPro:IPR022657), Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (InterPro:IPR022653); BEST Arabidopsis thaliana protein match is: Pyridoxal-dependent decarboxylase family protein (TAIR:AT3G14390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009089
IBA
IEA
Gene Ontologylysine biosynthetic process via diaminopimelate1
GO:0009089
IEA
InterProlysine biosynthetic process via diaminopimelate
GO:0009085
IEA
GOA Databaselysine biosynthetic process
GO:0008652
IEA
GOA Databasecellular amino acid biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008836
IEA
GOA Databasediaminopimelate decarboxylase activity
GO:0008836
IGI
IBA
Gene Ontologydiaminopimelate decarboxylase activity1 2
GO:0008836
IEA
InterProdiaminopimelate decarboxylase activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0016829
IEA
GOA Databaselyase activity
GO:0016831
IEA
GOA Databasecarboxy-lyase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma3
GO:0009536
IEA
GOA Databaseplastid
GO:0005829
IDA
GOA Databasecytosol
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM, IBA
Gene Ontologychloroplast1 4
GO:0005886
HDA
Gene Ontologyplasma membrane5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR009006 Alanine racemase/group IV decarboxylase, C-terminal
IPR029066 PLP-binding barrel
IPR002986 Diaminopimelate decarboxylase, LysA
IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal
IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal
IPR000183 Ornithine/DAP/Arg decarboxylase
Mapman id Description
4.1.2.2.3.5 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.diaminopimelate decarboxylase