Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G846 Trifolium pratense HOM05D004988 ORTHO05D005845 2.8e-52 208.4 108 100.0
Psat2g012000 Pisum sativum HOM05D004988 ORTHO05D005845 2.4e-51 205.3 107 98.1
TPR.G1199 Trifolium pratense HOM05D004988 ORTHO05D005845 3.1e-51 204.9 107 97.2
Medtr5g093110 Medicago truncatula HOM05D004988 ORTHO05D005845 5.3e-51 204.1 107 97.2
Glyma.14G022400 Glycine max HOM05D004988 ORTHO05D005845 2.9e-49 198.4 107 94.4
LjContig00272g0019234 Lotus japonicus HOM05D004988 ORTHO05D005845 4.9e-49 197.6 107 94.4
CiPaw.11G191700 Carya illinoinensis HOM05D004988 ORTHO05D005845 7.9e-47 190.3 107 88.8
Ca_06330_v3 Cicer arietinum L. HOM05D004988 ORTHO05D005845 7.9e-47 190.3 123 82.9
Ca_30701_v3 Cicer arietinum L. HOM05D004988 ORTHO05D005845 7.9e-47 190.3 123 82.9
Lalb_Chr04g0248341 Lupinus albus HOM05D004988 ORTHO05D005845 1.0e-46 189.9 107 90.7
VMungo0647G1120 Vigna mungo HOM05D004988 ORTHO05D005845 1.0e-46 189.9 122 82.8
CANSAT11G0463 Cannabis sativa HOM05D004988 ORTHO05D005845 1.5e-45 186.0 107 86.0
Eucgr.F00744 Eucalyptus grandis HOM05D004988 ORTHO05D005845 1.9e-45 185.7 107 86.9
TWI38G0959 Tripterygium wilfordii HOM05D004988 ORTHO05D005845 2.5e-45 185.3 107 86.0
arahy.Tifrunner.gnm1.ann1.E8M5A0 Arachis hypogaea HOM05D004988 ORTHO05D005845 5.6e-45 184.1 107 85.0
arahy.Tifrunner.gnm1.ann1.ZUJ4QN Arachis hypogaea HOM05D004988 ORTHO05D005845 5.6e-45 184.1 107 85.0
Ciclev10010304m.g Citrus clementina HOM05D004988 ORTHO05D005845 5.6e-45 184.1 107 85.0
Cfa020320 Carpinus fangiana HOM05D004988 ORTHO05D005845 7.4e-45 183.7 106 86.8
Thecc.07G033400 Theobroma cacao HOM05D004988 ORTHO05D005845 9.6e-45 183.3 107 85.0
FvH4_3g23000 Fragaria vesca HOM05D004988 ORTHO05D005845 1.3e-44 183.0 107 85.0
FAN21G3129 Fragaria x ananassa HOM05D004988 ORTHO05D005845 1.3e-44 183.0 107 85.0
Potri.011G089500 Populus trichocarpa HOM05D004988 ORTHO05D005845 1.3e-44 183.0 107 85.0
Prupe.4G216500 Prunus persica HOM05D004988 ORTHO05D005845 2.1e-44 182.2 107 83.2
GSVIVG01037674001 Vitis vinifera HOM05D004988 ORTHO05D005845 2.1e-44 182.2 107 85.0
THA.LOC104817863 Tarenaya hassleriana HOM05D004988 ORTHO05D005845 2.8e-44 181.8 107 84.1
Dinv40770 Davidia involucrata HOM05D004988 ORTHO05D005845 3.7e-44 181.4 107 84.1
RcHm_v2.0_Chr5g0040391 Rosa chinensis HOM05D004988 ORTHO05D005845 8.2e-44 180.3 107 83.2
PSO541G0855 Papaver somniferum HOM05D004988 ORTHO05D005845 1.1e-43 179.9 107 82.2
Sc16g0005920 Simmondsia chinensis HOM05D004988 ORTHO05D005845 1.1e-43 179.9 107 83.2
Manes.03G131500 Manihot esculenta HOM05D004988 ORTHO05D005845 1.4e-43 179.5 107 83.2
TAR626G1959 Trochodendron aralioides HOM05D004988 ORTHO05D005845 1.8e-43 179.1 107 83.2
FAN16G3602 Fragaria x ananassa HOM05D004988 ORTHO05D005845 2.4e-43 178.7 107 82.2
Gohir.A04G013900 Gossypium hirsutum HOM05D004988 ORTHO05D005845 2.4e-43 178.7 107 83.2
Duzib213G0327 Durio zibethinus HOM05D004988 ORTHO05D005845 3.1e-43 178.3 107 81.3
CSS0026270 Camellia sinensis var. sinensis HOM05D004988 ORTHO05D005845 4.0e-43 177.9 107 83.2
CSS0035479 Camellia sinensis var. sinensis HOM05D004988 ORTHO05D005845 4.0e-43 177.9 107 83.2
Gorai.009G440700 Gossypium raimondii HOM05D004988 ORTHO05D005845 5.3e-43 177.6 108 82.4
QL08p009451 Quercus lobata HOM05D004988 ORTHO05D005845 5.3e-43 177.6 109 80.7
Gohir.D05G372400 Gossypium hirsutum HOM05D004988 ORTHO05D005845 6.9e-43 177.2 107 82.2
Hma1.2p1_0036F.1_g023490 Hydrangea macrophylla HOM05D004988 ORTHO05D005845 6.9e-43 177.2 107 83.2
Hma1.2p1_0036F.1_g023500 Hydrangea macrophylla HOM05D004988 ORTHO05D005845 6.9e-43 177.2 107 83.2
Aqoxy1G03129 Aquilegia oxysepala HOM05D004988 ORTHO05D005845 9.0e-43 176.8 107 81.3
MD11G1214700 Malus domestica HOM05D004988 ORTHO05D005845 9.0e-43 176.8 107 82.2
PGR083G2184 Punica granatum HOM05D004988 ORTHO05D005845 9.0e-43 176.8 107 82.2
ClCG10G004940 Citrullus lanatus HOM05D004988 ORTHO05D005845 1.2e-42 176.4 107 84.1
Atru.chr1.2791 Acer truncatum HOM05D004988 ORTHO05D005845 1.5e-42 176.0 107 83.2
Sed0003845 Sechium edule HOM05D004988 ORTHO05D005845 1.5e-42 176.0 107 82.2
A05p28340 Brassica napus HOM05D000284 ORTHO05D005845 3.4e-42 174.9 107 81.3
BraA05t21720Z Brassica rapa HOM05D004988 ORTHO05D005845 3.4e-42 174.9 107 81.3
CARHR096230 Cardamine hirsuta HOM05D004988 ORTHO05D005845 3.4e-42 174.9 107 82.2
DCAR_009454 Daucus carota HOM05D004988 ORTHO05D005845 3.4e-42 174.9 107 82.2
MELO3C032293.2 Cucumis melo HOM05D004988 ORTHO05D005845 4.5e-42 174.5 107 83.2
AL3G34200 Arabidopsis lyrata HOM05D004988 ORTHO05D005845 7.6e-42 173.7 107 81.3
AT3G20475 Arabidopsis thaliana HOM05D004988 ORTHO05D005845 7.6e-42 173.7 107 81.3
Carub.0003s2042 Capsella rubella HOM05D004988 ORTHO05D005845 1.0e-41 173.3 107 81.3
C05p43830 Brassica napus HOM05D000284 ORTHO05D005845 1.3e-41 172.9 107 80.4
BolC5t33100H Brassica oleracea HOM05D004988 ORTHO05D005845 1.3e-41 172.9 107 80.4
Cc05_g13960 Coffea canephora HOM05D004988 ORTHO05D005845 1.3e-41 172.9 107 78.5
Lsat_1_v5_gn_9_90520 Lactuca sativa HOM05D004988 ORTHO05D005845 1.7e-41 172.6 107 80.4
Oeu062583.1 Olea europaea HOM05D004988 ORTHO05D005845 2.2e-41 172.2 107 80.4
MSTRG.6932 Avicennia marina HOM05D004988 ORTHO05D005845 2.9e-41 171.8 107 77.6
AUR62015808 Chenopodium quinoa HOM05D004988 ORTHO05D005845 2.9e-41 171.8 114 78.9
Sp3g18490 Schrenkiella parvula HOM05D004988 ORTHO05D005845 2.9e-41 171.8 107 80.4
Thhalv10022259m.g Eutrema salsugineum HOM05D004988 ORTHO05D005845 3.8e-41 171.4 107 80.4
SGA_v2.0_scaffold36G14386 Striga asiatica HOM05D004988 ORTHO05D005845 3.8e-41 171.4 107 80.4
vmacro09701 Vaccinium macrocarpon HOM05D004988 ORTHO05D005845 3.8e-41 171.4 107 78.5
Nn1g03486 Nelumbo nucifera HOM05D004988 ORTHO05D005845 4.9e-41 171.0 107 79.4
Migut.M01745 Erythranthe guttata HOM05D004988 ORTHO05D005845 2.5e-40 168.7 107 77.6
HanXRQChr03g0079751 Helianthus annuus HOM05D004988 ORTHO05D005845 2.5e-40 168.7 107 79.4
HanXRQChr05g0152621 Helianthus annuus HOM05D004988 ORTHO05D005845 2.5e-40 168.7 107 79.4
Peaxi162Scf00350g00215 Petunia axillaris HOM05D004988 ORTHO05D005845 2.5e-40 168.7 107 77.6
Hund02015 Selenicereus undatus HOM05D004988 ORTHO05D005845 7.1e-40 167.2 107 79.4
ECA240G2090 Erigeron canadensis HOM05D004988 ORTHO05D005845 1.2e-39 166.4 107 77.6
CAN.G1568.1 Capsicum annuum HOM05D004988 ORTHO05D005845 3.5e-39 164.9 107 75.7
FAN11G0321 Fragaria x ananassa HOM05D004988 ORTHO05D005845 3.5e-39 164.9 143 63.6
Sopen10g008290 Solanum pennellii HOM05D004988 ORTHO05D005845 3.5e-39 164.9 107 75.7
Solyc10g018540.2 Solanum lycopersicum HOM05D004988 ORTHO05D005845 4.6e-39 164.5 107 74.8
AUR62020409 Chenopodium quinoa HOM05D004988 ORTHO05D005845 6.0e-39 164.1 107 78.5
EL10Ac4g07775 Beta vulgaris HOM05D004988 ORTHO05D005845 1.3e-38 162.9 129 68.2
Aa31LG8G7300 Aethionema arabicum HOM05D004988 ORTHO05D005845 5.1e-38 161.0 114 75.4
FAN25G1090 Fragaria x ananassa HOM05D004988 ORTHO05D005845 8.7e-38 160.2 143 62.2
Os05g0498300 Oryza sativa ssp. japonica HOM05D004988 ORTHO05D005845 1.1e-37 159.8 107 74.8
Haze_09701 Corylus avellana HOM05D004988 ORTHO05D005845 2.5e-37 158.7 154 60.4
ATR0794G119 Amborella trichopoda HOM05D004988 ORTHO05D005845 1.6e-36 156.0 107 70.1
Nitab4.5_0000882g0080 Nicotiana tabacum HOM05D004988 ORTHO05D005845 5.0e-33 144.4 150 53.3
HPP92_001600 Vanilla planifolia HOM05D004988 ORTHO05D005845 2.5e-29 132.1 107 62.6
HPP92_001599 Vanilla planifolia HOM05D004988 ORTHO05D005845 2.2e-28 129.0 107 61.7
Nitab4.5_0007776g0020 Nicotiana tabacum HOM05D004988 ORTHO05D005845 4.8e-28 127.9 183 43.2
AagrBONN_evm.TU.Sc2ySwM_344.3443 Anthoceros agrestis HOM05D004988 ORTHO05D005845 2.2e-25 119.0 107 53.3
Sabra11G0079200 Salix brachista HOM05D004988 ORTHO05D005845 2.9e-25 118.6 73 80.8
Sabra11G0073600 Salix brachista HOM05D004988 ORTHO05D005845 1.1e-24 116.7 73 80.8
FAN25G1441 Fragaria x ananassa HOM05D004988 ORTHO05D005845 9.4e-24 113.6 79 74.7
Lj1C875G1 Lonicera japonica HOM05D004988 ORTHO05D005845 1.6e-23 112.8 73 79.5
RcHm_v2.0_Chr5g0040451 Rosa chinensis HOM05D004988 ORTHO05D005845 2.1e-23 112.5 79 73.4
RhsimUnG0249000 Rhododendron simsii HOM05D004988 ORTHO05D005845 2.3e-22 109.0 73 74.0
HanXRQChr03g0079771 Helianthus annuus HOM05D004988 ORTHO05D005845 1.1e-21 106.7 74 75.7
Pp3c2_9530 Physcomitrium patens HOM05D004988 ORTHO05D005845 2.6e-21 105.5 123 44.7
Mapoly0055s0066 Marchantia polymorpha HOM05D004988 ORTHO05D005845 8.2e-20 100.5 107 53.3
CBR_g24261 Chara braunii HOM05D004988 ORTHO05D005845 4.1e-19 98.2 107 45.8
SEGI_15895 Sequoiadendron giganteum HOM05D004988 ORTHO05D005845 1.0e-17 93.6 98 51.0
unitig_578.g15992 Utricularia gibba HOM05D004988 ORTHO05D005845 3.8e-17 91.7 73 64.4
COL.COLO4_09682 Corchorus olitorius HOM05D004988 ORTHO05D005845 1.0e-14 83.6 52 84.6
MBI18_g22342_MAGBIO Magnolia biondii HOM05D004988 ORTHO05D005845 4.4e-13 78.2 107 43.9
Gorai.009G440600 Gossypium raimondii HOM05D004988 ORTHO05D005845 2.6e-10 68.9 34 88.2


User provided reference genes

Program Settings