Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 0.0e+00 1849.3 933 100.0
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 0.0e+00 1501.5 933 83.0
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 0.0e+00 1370.1 936 76.5
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 0.0e+00 1327.4 935 74.2
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 0.0e+00 1324.3 937 74.4
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 0.0e+00 1317.4 927 74.1
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 0.0e+00 1303.1 812 82.1
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 0.0e+00 1301.2 935 73.4
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 0.0e+00 1263.4 898 73.1
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 0.0e+00 1263.1 943 70.8
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 6.3e-286 987.6 1002 55.9
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 9.2e-285 983.8 698 73.6
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 4.0e-280 968.4 995 55.5
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 2.6e-279 965.7 995 55.4
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 1.4e-277 959.9 1053 53.0
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 2.5e-266 922.5 978 54.8
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 5.2e-264 914.8 951 54.7
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 4.4e-263 911.8 994 53.2
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 7.8e-260 901.0 897 56.1
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 1.5e-258 896.7 948 54.0
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 2.5e-258 896.0 921 56.6
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 2.5e-258 896.0 959 54.6
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 1.6e-257 893.3 852 57.4
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 2.1e-257 892.9 915 55.8
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 1.4e-256 890.2 975 53.4
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 2.4e-256 889.4 947 54.3
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 7.1e-253 877.9 952 53.4
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 1.7e-251 873.2 981 52.1
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 2.3e-251 872.8 922 54.6
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 5.1e-251 871.7 965 52.8
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 5.1e-251 871.7 1002 52.1
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 5.1e-251 871.7 996 51.5
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 3.3e-250 869.0 968 53.6
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 2.0e-247 859.8 967 52.7
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 1.7e-246 856.7 989 51.1
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 1.1e-245 854.0 989 50.9
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 1.2e-244 850.5 962 52.4
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 6.0e-244 848.2 965 51.1
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 8.7e-243 844.3 966 51.4
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 1.1e-242 844.0 996 50.3
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 1.6e-241 840.1 963 50.9
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 3.6e-241 839.0 972 51.6
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 4.8e-241 838.6 957 51.4
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 6.2e-241 838.2 927 53.5
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 1.5e-239 833.6 945 51.9
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 3.4e-239 832.4 977 50.8
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 7.6e-239 831.2 953 51.1
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 2.9e-238 829.3 955 51.3
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 3.8e-238 828.9 997 50.8
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 1.2e-236 823.9 920 51.3
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 2.7e-236 822.8 918 51.7
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 1.0e-235 820.8 924 51.2
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 4.3e-234 815.5 1007 49.2
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 6.2e-233 811.6 913 51.8
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 1.1e-232 810.8 882 52.3
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 1.4e-232 810.4 971 50.6
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 1.5e-231 807.0 940 51.2
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 4.5e-231 805.4 949 50.5
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 5.8e-231 805.1 922 51.5
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.0e-230 804.3 849 53.8
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 2.9e-230 802.7 991 49.4
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 2.5e-229 799.7 934 50.6
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 4.2e-229 798.9 962 49.0
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 9.3e-229 797.7 862 52.4
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 9.3e-229 797.7 1007 48.8
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 1.0e-227 794.3 934 50.7
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 2.3e-227 793.1 823 54.2
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 1.9e-226 790.0 911 51.7
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 1.1e-224 784.3 884 51.2
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 1.5e-223 780.4 958 50.0
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 1.5e-223 780.4 937 49.7
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 1.1e-216 757.7 928 48.7
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 9.0e-216 754.6 920 48.9
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 1.2e-215 754.2 896 50.1
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 7.7e-215 751.5 922 49.2
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 1.0e-214 751.1 859 51.5
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 1.4e-213 747.3 916 48.4
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 2.5e-213 746.5 740 55.9
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 1.1e-210 737.6 920 48.3
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 7.4e-210 734.9 970 47.0
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 6.3e-209 731.9 719 56.7
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 8.2e-209 731.5 919 48.2
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 5.9e-207 725.3 903 47.1
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 5.9e-207 725.3 924 47.6
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 1.7e-206 723.8 943 47.0
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 2.9e-206 723.0 857 50.1
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 3.8e-206 722.6 903 47.0
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 2.0e-202 710.3 901 46.9
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 2.8e-201 706.4 844 49.9
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 1.1e-197 694.5 956 45.4
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 1.6e-191 674.1 834 47.2
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 7.2e-189 665.2 1009 42.1
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 1.2e-188 664.5 912 44.8
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 6.1e-188 662.1 958 45.2
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 1.1e-181 641.3 686 53.2
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 1.3e-174 617.8 851 44.2
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 2.3e-174 617.1 584 57.5
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 8.9e-171 605.1 711 50.6
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 3.2e-168 596.7 621 53.0
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 5.9e-167 592.4 960 40.6
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 1.0e-163 581.6 591 55.3
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 2.9e-161 573.5 416 73.6
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 6.6e-150 535.8 892 42.4
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 2.3e-147 527.3 824 40.0
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 5.2e-147 526.2 813 39.7
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 1.6e-143 514.6 1049 35.7
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 7.8e-135 485.7 927 36.7
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 4.9e-129 466.5 801 37.8
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 2.4e-123 447.6 481 51.8
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 5.9e-98 363.2 1006 29.6
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 4.0e-46 191.0 276 43.5
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 2.7e-42 178.3 916 23.0
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 7.8e-42 176.8 382 30.6
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 1.7e-41 175.6 378 32.0
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.2e-26 126.3 408 26.5
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.6e-26 125.9 140 51.4
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.2e-21 109.8 171 42.1
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 2.6e-21 108.6 311 28.0
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 4.4e-21 107.8 194 39.7
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 1.3e-15 89.7 85 60.0
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 5.3e-14 84.3 111 45.9
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.5e-13 82.8 214 29.9
SHI25355 Sapria himalayana HOM05D006375 ORTHO05D000014 5.3e-06 57.8 113 32.7


User provided reference genes

Program Settings