Gene: ATR0564G422
General Information
Structural Information
- Species Amborella trichopoda
- Gene Identifier ATR0564G422
- Transcript Identifier ATR0564G422.1
- Gene Type Coding gene
- Location AmTr_v1.0_scaffold00010 : 2536207-2545758 : negative
Gene Family Information
- ID HOM05D006375
- #Genes/#Species 125/98
- Phylogenetic origin
- ID ORTHO05D008188
- #Genes/#Species 122/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id evm_27.TU.AmTr_v1.0_scaffold00010.125.v1.0
- pacid 31573072
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006289 | IEA | InterPro | nucleotide-excision repair |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003684 | IEA | InterPro | damaged DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G16630 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR004583 | DNA repair protein Rad4 |
| IPR018328 | Rad4 beta-hairpin domain 3 |
| IPR036985 | Transglutaminase-like superfamily |
| IPR018326 | Rad4 beta-hairpin domain 1 |
| IPR018327 | Rad4 beta-hairpin domain 2 |
| IPR042488 | Rad4, beta-hairpin domain 3 superfamily |
| IPR038765 | Papain-like cysteine peptidase superfamily |
| IPR018325 | Rad4/PNGase transglutaminase-like fold |
| Mapman id | Description |
|---|---|
| 14.6.1.2 | DNA damage response.nucleotide excision repair (NER).global genome nucleotide excision repair (GG-NER).DNA repair protein (XPC) |