Gene: Sopen11g005910

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g005910
  • Transcript Identifier Sopen11g005910.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 4241299-4251294 : positive

Gene Family Information

  • ID HOM05D006375
  • #Genes/#Species 125/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g005910.1

Descriptions

  • Description RAD4 | FUNCTIONS IN: damaged DNA binding | INVOLVED IN: nucleotide-excision repair | LOCATED IN: nucleus, chloroplast | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Transglutaminase-like , DNA repair protein Rad4, DNA-binding domain 1 , DNA repair protein Rad4, DNA-binding domain 3 , DNA repair protein Rad4, DNA-binding domain 2 , DNA repair protein Rad4, transglutaminase-like domain , DNA repair protein Rad4
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006289
IEA
InterPronucleotide-excision repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003684
IEA
InterProdamaged DNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G16630

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018328 Rad4 beta-hairpin domain 3
IPR036985 Transglutaminase-like superfamily
IPR042488 Rad4, beta-hairpin domain 3 superfamily
IPR004583 DNA repair protein Rad4
IPR018326 Rad4 beta-hairpin domain 1
IPR018327 Rad4 beta-hairpin domain 2
IPR038765 Papain-like cysteine peptidase superfamily
IPR002931 Transglutaminase-like
IPR018325 Rad4/PNGase transglutaminase-like fold
Mapman id Description
14.6.1.2 DNA damage response.nucleotide excision repair (NER).global genome nucleotide excision repair (GG-NER).DNA repair protein (XPC)