Gene: Sopen11g005910
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen11g005910
- Transcript Identifier Sopen11g005910.1
- Gene Type Coding gene
- Location Spenn-ch11 : 4241299-4251294 : positive
Gene Family Information
- ID HOM05D006375
- #Genes/#Species 125/98
- Phylogenetic origin
- ID ORTHO05D008188
- #Genes/#Species 122/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen11g005910.1
Descriptions
- Description RAD4 | FUNCTIONS IN: damaged DNA binding | INVOLVED IN: nucleotide-excision repair | LOCATED IN: nucleus, chloroplast | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Transglutaminase-like , DNA repair protein Rad4, DNA-binding domain 1 , DNA repair protein Rad4, DNA-binding domain 3 , DNA repair protein Rad4, DNA-binding domain 2 , DNA repair protein Rad4, transglutaminase-like domain , DNA repair protein Rad4
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006289 | IEA | InterPro | nucleotide-excision repair |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003677 | IEA | InterPro | DNA binding | |
GO:0003684 | IEA | InterPro | damaged DNA binding |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005634 | IEA | InterPro | nucleus | |
GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G16630 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR018328 | Rad4 beta-hairpin domain 3 |
IPR036985 | Transglutaminase-like superfamily |
IPR042488 | Rad4, beta-hairpin domain 3 superfamily |
IPR004583 | DNA repair protein Rad4 |
IPR018326 | Rad4 beta-hairpin domain 1 |
IPR018327 | Rad4 beta-hairpin domain 2 |
IPR038765 | Papain-like cysteine peptidase superfamily |
IPR002931 | Transglutaminase-like |
IPR018325 | Rad4/PNGase transglutaminase-like fold |
Mapman id | Description |
---|---|
14.6.1.2 | DNA damage response.nucleotide excision repair (NER).global genome nucleotide excision repair (GG-NER).DNA repair protein (XPC) |