Gene: Solyc11g011150.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc11g011150.2
  • Transcript Identifier Solyc11g011150.2.1
  • Gene Type Coding gene
  • Location SL4.0ch11 : 4256674-4266642 : positive

Gene Family Information

  • ID HOM05D006375
  • #Genes/#Species 125/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc11g011150.2.1
  • uniprot A0A3Q7JJ51
  • gene_id Solyc11g011150

Descriptions

  • Description DNA repair protein Rad4 family (AHRD V3.3 *** A0A2U1M2U6_ARTAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006289
IBA
IEA
GOA Databasenucleotide-excision repair
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0006298
IBA
GOA Databasemismatch repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003697
IBA
GOA Databasesingle-stranded DNA binding
GO:0003684
IBA
IEA
GOA Databasedamaged DNA binding
GO:0003684
IEA
InterProdamaged DNA binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G16630
GO:0000111
IBA
GOA Databasenucleotide-excision repair factor 2 complex
GO:0005737
IBA
GOA Databasecytoplasm
GO:0071942
IBA
GOA DatabaseXPC complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004583 DNA repair protein Rad4
IPR018328 Rad4 beta-hairpin domain 3
IPR018325 Rad4/PNGase transglutaminase-like fold
IPR018327 Rad4 beta-hairpin domain 2
IPR002931 Transglutaminase-like
IPR038765 Papain-like cysteine peptidase superfamily
IPR042488 Rad4, beta-hairpin domain 3 superfamily
IPR018326 Rad4 beta-hairpin domain 1
IPR036985 Transglutaminase-like superfamily
Mapman id Description
14.6.1.2 DNA damage response.nucleotide excision repair (NER).global genome nucleotide excision repair (GG-NER).DNA repair protein (XPC)