Gene: AT5G16630

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G16630
  • Transcript Identifier AT5G16630.2
  • Gene Type Coding gene
  • Location Chr5 : 5455325-5459461 : positive

Gene Family Information

  • ID HOM05D006375
  • #Genes/#Species 125/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G16630.2
  • symbol RAD4
  • uniprot Q8W489

Descriptions

  • Description DNA repair protein Rad4 family
  • Computational description RAD4; FUNCTIONS IN: damaged DNA binding; INVOLVED IN: nucleotide-excision repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transglutaminase-like (InterPro:IPR002931), DNA repair protein Rad4, DNA-binding domain 1 (InterPro:IPR018326), DNA repair protein Rad4, DNA-binding domain 3 (InterPro:IPR018328), DNA repair protein Rad4, DNA-binding domain 2 (InterPro:IPR018327), DNA repair protein Rad4, transglutaminase-like domain (InterPro:IPR018325), DNA repair protein Rad4 (InterPro:IPR004583); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Computational description RAD4; FUNCTIONS IN: damaged DNA binding; INVOLVED IN: nucleotide-excision repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transglutaminase-like (InterPro:IPR002931), DNA repair protein Rad4, DNA-binding domain 1 (InterPro:IPR018326), DNA repair protein Rad4, DNA-binding domain 3 (InterPro:IPR018328), DNA repair protein Rad4, DNA-binding domain 2 (InterPro:IPR018327), DNA repair protein Rad4, transglutaminase-like domain (InterPro:IPR018325), DNA repair protein Rad4 (InterPro:IPR004583); Has 662 Blast hits to 576 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 224; Fungi - 265; Plants - 79; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006298
IBA
Gene Ontologymismatch repair1
GO:0006289
IBA
IEA
Gene Ontologynucleotide-excision repair1
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003684
IBA
IEA
Gene Ontologydamaged DNA binding1
GO:0003684
IEA
InterProdamaged DNA binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0003697
IBA
Gene Ontologysingle-stranded DNA binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
IEA
Gene Ontologynucleus
GO:0005634
IEA
InterPronucleus
GO:0009507
IDA
GOA Databasechloroplast
GO:0009507
HDA
Gene Ontologychloroplast2
GO:0071942
IBA
Gene OntologyXPC complex1
GO:0000111
IBA
Gene Ontologynucleotide-excision repair factor 2 complex1
GO:0005737
IBA
Gene Ontologycytoplasm1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038765 Papain-like cysteine peptidase superfamily
IPR042488 Rad4, beta-hairpin domain 3 superfamily
IPR018327 Rad4 beta-hairpin domain 2
IPR018328 Rad4 beta-hairpin domain 3
IPR018326 Rad4 beta-hairpin domain 1
IPR002931 Transglutaminase-like
IPR018325 Rad4/PNGase transglutaminase-like fold
IPR004583 DNA repair protein Rad4
IPR036985 Transglutaminase-like superfamily
Mapman id Description
14.6.1.2 DNA damage response.nucleotide excision repair (NER).global genome nucleotide excision repair (GG-NER).DNA repair protein (XPC)