Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7405 Trifolium pratense HOM05D006305 ORTHO05D007984 1.4e-79 299.7 168 100.0
Medtr1g082570 Medicago truncatula HOM05D006305 ORTHO05D007984 4.3e-52 208.4 157 76.4
Psat0ss6702g0320 Pisum sativum HOM05D006305 ORTHO05D007984 3.7e-51 205.3 157 80.3
Ca_10097_v3 Cicer arietinum L. HOM05D006305 ORTHO05D007984 4.1e-50 201.8 156 73.1
CANSAT54G0217 Cannabis sativa HOM05D006305 ORTHO05D007984 4.2e-39 165.2 153 59.5
FAN14G0751 Fragaria x ananassa HOM05D006305 ORTHO05D007984 4.2e-39 165.2 155 60.0
FAN14G5210 Fragaria x ananassa HOM05D006305 ORTHO05D007984 4.2e-39 165.2 155 60.0
Phvul.007G181700 Phaseolus vulgaris HOM05D006305 ORTHO05D007984 5.5e-39 164.9 160 61.9
CiPaw.07G015100 Carya illinoinensis HOM05D006305 ORTHO05D007984 1.2e-38 163.7 176 56.8
FvH4_6g05460 Fragaria vesca HOM05D006305 ORTHO05D007984 1.2e-38 163.7 158 60.1
FAN05G0068 Fragaria x ananassa HOM05D006305 ORTHO05D007984 2.1e-38 162.9 158 60.1
FAN05G5097 Fragaria x ananassa HOM05D006305 ORTHO05D007984 2.1e-38 162.9 158 60.1
RcHm_v2.0_Chr3g0454231 Rosa chinensis HOM05D006305 ORTHO05D007984 4.7e-38 161.8 157 59.9
VMungo0720G1654 Vigna mungo HOM05D006305 ORTHO05D007984 6.7e-37 157.9 142 69.7
arahy.Tifrunner.gnm1.ann1.84BFE2 Arachis hypogaea HOM05D006305 ORTHO05D007984 1.3e-35 153.7 164 62.2
Glyma.10G156300 Glycine max HOM05D006305 ORTHO05D007984 2.2e-35 152.9 160 58.1
BcaC05g30009 Brassica carinata HOM05D006305 ORTHO05D007984 4.8e-35 151.8 149 55.0
C05p61980 Brassica napus HOM05D006305 ORTHO05D007984 4.8e-35 151.8 149 55.0
BolC5t34858H Brassica oleracea HOM05D006305 ORTHO05D007984 1.4e-34 150.2 149 54.4
Gohir.A13G173500 Gossypium hirsutum HOM05D006305 ORTHO05D007984 3.1e-34 149.1 159 57.9
Gohir.D13G179200 Gossypium hirsutum HOM05D006305 ORTHO05D007984 7.0e-34 147.9 143 56.6
Lj5g0026498 Lotus japonicus HOM05D006305 ORTHO05D007984 9.1e-34 147.5 140 67.9
QL03p004578 Quercus lobata HOM05D006305 ORTHO05D007984 9.1e-34 147.5 180 53.3
Haze_04230 Corylus avellana HOM05D006305 ORTHO05D007984 1.2e-33 147.1 152 63.2
MD04G1208500 Malus domestica HOM05D006305 ORTHO05D007984 1.6e-33 146.7 162 52.5
Thecc.05G307300 Theobroma cacao HOM05D006305 ORTHO05D007984 2.0e-33 146.4 163 52.8
BcaC05g30168 Brassica carinata HOM05D006305 ORTHO05D007984 3.5e-33 145.6 172 53.5
EL10Ac4g09328 Beta vulgaris HOM05D006305 ORTHO05D007984 4.5e-33 145.2 158 52.5
Manes.09G164300 Manihot esculenta HOM05D006305 ORTHO05D007984 5.9e-33 144.8 155 53.5
Potri.005G036700 Populus trichocarpa HOM05D006305 ORTHO05D007984 5.9e-33 144.8 176 51.7
Cfa006552 Carpinus fangiana HOM05D006305 ORTHO05D007984 1.0e-32 144.1 157 60.5
Gorai.013G204500 Gossypium raimondii HOM05D006305 ORTHO05D007984 1.0e-32 144.1 150 56.7
Atru.chr2.472 Acer truncatum HOM05D006305 ORTHO05D007984 1.3e-32 143.7 160 56.2
Nitab4.5_0001211g0080 Nicotiana tabacum HOM05D006305 ORTHO05D007984 1.3e-32 143.7 148 56.8
Hma1.2p1_0666F.1_g199520 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 1.7e-32 143.3 155 54.8
TAR636G3548 Trochodendron aralioides HOM05D006305 ORTHO05D007984 1.7e-32 143.3 155 61.9
Carub.0003s0446 Capsella rubella HOM05D006305 ORTHO05D007984 2.2e-32 142.9 160 53.1
Migut.F01514 Erythranthe guttata HOM05D006305 ORTHO05D007984 2.2e-32 142.9 157 52.2
SGA_v2.0_scaffold34G13953 Striga asiatica HOM05D006305 ORTHO05D007984 2.2e-32 142.9 160 50.6
SalBow6G6985 Salvia bowleyana HOM05D006305 ORTHO05D007984 2.9e-32 142.5 156 50.6
Nitab4.5_0002756g0070 Nicotiana tabacum HOM05D006305 ORTHO05D007984 3.8e-32 142.1 155 52.9
THA.LOC104820089 Tarenaya hassleriana HOM05D006305 ORTHO05D007984 6.5e-32 141.4 170 50.6
TWI56G0624 Tripterygium wilfordii HOM05D006305 ORTHO05D007984 6.5e-32 141.4 166 52.4
Sc16g0008400 Simmondsia chinensis HOM05D006305 ORTHO05D007984 8.5e-32 141.0 154 51.9
arahy.Tifrunner.gnm1.ann1.39Z7HW Arachis hypogaea HOM05D006305 ORTHO05D007984 1.1e-31 140.6 164 58.5
Sp3g04060 Schrenkiella parvula HOM05D006305 ORTHO05D007984 1.5e-31 140.2 170 50.0
PGR031G3204 Punica granatum HOM05D006305 ORTHO05D007984 3.2e-31 139.0 170 54.7
SalBow6G3462 Salvia bowleyana HOM05D006305 ORTHO05D007984 3.2e-31 139.0 151 51.0
PSO782G4398 Papaver somniferum HOM05D006305 ORTHO05D007984 4.2e-31 138.7 156 57.1
AT3G05210 Arabidopsis thaliana HOM05D006305 ORTHO05D007984 5.5e-31 138.3 158 52.5
Eucgr.H04470 Eucalyptus grandis HOM05D006305 ORTHO05D007984 5.5e-31 138.3 164 53.7
PSO063G7033 Papaver somniferum HOM05D006305 ORTHO05D007984 5.5e-31 138.3 155 57.4
A05p42370 Brassica napus HOM05D006305 ORTHO05D007984 7.2e-31 137.9 152 50.7
BraA05t23013Z Brassica rapa HOM05D006305 ORTHO05D007984 7.2e-31 137.9 152 50.7
CAN.G479.41 Capsicum annuum HOM05D006305 ORTHO05D007984 7.2e-31 137.9 151 54.3
MELO3C025022.2 Cucumis melo HOM05D006305 ORTHO05D007984 7.2e-31 137.9 161 52.2
Peaxi162Scf00274g00026 Petunia axillaris HOM05D006305 ORTHO05D007984 7.2e-31 137.9 147 53.1
Thhalv10020823m.g Eutrema salsugineum HOM05D006305 ORTHO05D007984 1.2e-30 137.1 173 48.6
Lalb_Chr02g0148341 Lupinus albus HOM05D006305 ORTHO05D007984 1.2e-30 137.1 160 60.6
CSS0021232 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 2.1e-30 136.3 161 54.0
Lj9A683T26 Lonicera japonica HOM05D006305 ORTHO05D007984 2.1e-30 136.3 159 51.6
Sed0018566 Sechium edule HOM05D006305 ORTHO05D007984 2.1e-30 136.3 160 51.2
AL3G15630 Arabidopsis lyrata HOM05D006305 ORTHO05D007984 2.7e-30 136.0 149 58.4
BcaC05g30019 Brassica carinata HOM05D006305 ORTHO05D007984 2.7e-30 136.0 148 51.4
Lsat_1_v5_gn_2_67520 Lactuca sativa HOM05D006305 ORTHO05D007984 2.7e-30 136.0 154 51.9
GSVIVG01000016001 Vitis vinifera HOM05D006305 ORTHO05D007984 2.7e-30 136.0 143 55.9
MSTRG.306 Avicennia marina HOM05D006305 ORTHO05D007984 3.6e-30 135.6 174 48.3
ClCG08G002270 Citrullus lanatus HOM05D006305 ORTHO05D007984 4.7e-30 135.2 162 54.3
CsaV3_6G002610 Cucumis sativus L. HOM05D006305 ORTHO05D007984 4.7e-30 135.2 157 52.2
CSS0018445 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 6.1e-30 134.8 158 53.2
HPP92_015091 Vanilla planifolia HOM05D006305 ORTHO05D007984 6.1e-30 134.8 161 48.4
Aqoxy5G04250 Aquilegia oxysepala HOM05D006305 ORTHO05D007984 8.0e-30 134.4 158 48.7
Ciclev10001229m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.0e-29 134.0 162 51.9
HanXRQChr15g0472081 Helianthus annuus HOM05D006305 ORTHO05D007984 4.0e-29 132.1 157 50.3
Sabra05G0037100 Salix brachista HOM05D006305 ORTHO05D007984 6.8e-29 131.3 165 56.4
CDE11G1040 Ceratophyllum demersum HOM05D006305 ORTHO05D007984 8.8e-29 131.0 159 52.2
Ah.06g189130 Amaranthus hybridus HOM05D006305 ORTHO05D007984 1.2e-28 130.6 158 48.7
Dinv23970 Davidia involucrata HOM05D006305 ORTHO05D007984 1.2e-28 130.6 166 50.0
Solyc03g115580.4 Solanum lycopersicum HOM05D006305 ORTHO05D007984 1.5e-28 130.2 170 48.2
Nn3g18889 Nelumbo nucifera HOM05D006305 ORTHO05D007984 4.4e-28 128.6 146 58.9
Cc02_g33730 Coffea canephora HOM05D006305 ORTHO05D007984 7.5e-28 127.9 163 48.5
PGSC0003DMG400024658 Solanum tuberosum HOM05D006305 ORTHO05D007984 7.5e-28 127.9 156 50.6
Rhsim05G0143900 Rhododendron simsii HOM05D006305 ORTHO05D007984 2.8e-27 125.9 178 46.1
Hund21683 Selenicereus undatus HOM05D006305 ORTHO05D007984 2.8e-27 125.9 148 57.4
FAN02G0061 Fragaria x ananassa HOM05D006305 ORTHO05D007984 6.3e-27 124.8 158 48.1
Aa31LG5G15590 Aethionema arabicum HOM05D006305 ORTHO05D007984 1.8e-26 123.2 169 51.5
Sopen03g034570 Solanum pennellii HOM05D006305 ORTHO05D007984 9.1e-26 120.9 156 55.1
DCAR_029432 Daucus carota HOM05D006305 ORTHO05D007984 7.7e-25 117.9 163 53.4
unitig_746.g26625 Utricularia gibba HOM05D006305 ORTHO05D007984 7.7e-25 117.9 159 44.7
ATR0620G066 Amborella trichopoda HOM05D006305 ORTHO05D007984 2.2e-24 116.3 158 47.5
ECA238G3439 Erigeron canadensis HOM05D006305 ORTHO05D007984 1.5e-23 113.6 158 52.5
vmacro19639 Vaccinium macrocarpon HOM05D006305 ORTHO05D007984 1.8e-21 106.7 225 37.8
Zm00001eb043410 Zea mays HOM05D006305 ORTHO05D007984 5.4e-18 95.1 170 44.7
AagrBONN_evm.TU.Sc2ySwM_369.531 Anthoceros agrestis HOM05D006305 ORTHO05D007984 1.2e-17 94.0 180 38.3
COL.COLO4_19840 Corchorus olitorius HOM05D006305 ORTHO05D007984 1.2e-17 94.0 57 77.2
CBR_g4857 Chara braunii HOM05D006305 ORTHO05D007984 1.6e-17 93.6 113 44.2
Pp3c6_29610 Physcomitrium patens HOM05D006305 ORTHO05D007984 2.0e-17 93.2 113 46.0
Cpa.g.sc1183.2 Carica papaya HOM05D006305 ORTHO05D007984 7.7e-17 91.3 165 40.0
CARHR079550 Cardamine hirsuta HOM05D006305 ORTHO05D007984 2.9e-16 89.4 70 61.4
Ciclev10003828m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.1e-15 87.4 67 64.2
Mapoly0128s0010 Marchantia polymorpha HOM05D006305 ORTHO05D007984 3.3e-15 85.9 114 51.8
Ciclev10003373m.g Citrus clementina HOM05D006305 ORTHO05D007984 7.3e-15 84.7 53 75.5
Duzib106G1918 Durio zibethinus HOM05D006305 ORTHO05D007984 4.7e-14 82.0 168 44.0
Os10g0518900 Oryza sativa ssp. japonica HOM05D006305 ORTHO05D007984 4.7e-14 82.0 50 74.0
AUR62000888 Chenopodium quinoa HOM05D006305 ORTHO05D007984 2.3e-13 79.7 57 64.9
SMO146G0211 Selaginella moellendorffii HOM05D006305 ORTHO05D007984 3.0e-13 79.3 53 69.8
AUR62005086 Chenopodium quinoa HOM05D006305 ORTHO05D007984 4.0e-13 79.0 52 69.2
MBI04_g21739_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 8.9e-13 77.8 59 67.8
Prupe.6G329400 Prunus persica HOM05D006305 ORTHO05D007984 2.6e-12 76.3 41 82.9
Ciclev10003460m.g Citrus clementina HOM05D006305 ORTHO05D007984 4.9e-11 72.0 37 86.5
PRCOL_00003423 Prasinoderma coloniale HOM05D006305 ORTHO05D007984 2.7e-09 66.2 47 53.2
MELO3C033326.2 Cucumis melo HOM05D006305 ORTHO05D168382 4.6e-09 65.5 34 88.2
Cre03.g196651 Chlamydomonas reinhardtii HOM05D006305 ORTHO05D007984 6.6e-08 61.6 54 51.9
Cfa026476 Carpinus fangiana HOM05D006305 ORTHO05D007984 1.9e-07 60.1 66 42.4


User provided reference genes

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