Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7328 Trifolium pratense HOM05D003261 ORTHO05D004230 9.4e-25 115.9 54 100.0
TPR.G22357 Trifolium pratense HOM05D003261 ORTHO05D004230 1.4e-23 112.1 54 94.4
Ca_01925_v3 Cicer arietinum L. HOM05D003261 ORTHO05D004230 8.8e-23 109.4 54 90.7
MD00G1128100 Malus domestica HOM05D003261 ORTHO05D004230 1.2e-22 109.0 54 90.7
Medtr2g436510 Medicago truncatula HOM05D003261 ORTHO05D004230 1.5e-22 108.6 54 90.7
Psat1g155040 Pisum sativum HOM05D003261 ORTHO05D004230 1.5e-22 108.6 54 90.7
FvH4_4g18400 Fragaria vesca HOM05D003261 ORTHO05D004230 3.4e-22 107.5 54 87.0
FAN07G1152 Fragaria x ananassa HOM05D003261 ORTHO05D004230 3.4e-22 107.5 54 87.0
FAN12G0468 Fragaria x ananassa HOM05D003261 ORTHO05D004230 3.4e-22 107.5 54 87.0
FAN12G4234 Fragaria x ananassa HOM05D003261 ORTHO05D004230 3.4e-22 107.5 54 87.0
FAN17G0608 Fragaria x ananassa HOM05D003261 ORTHO05D004230 3.4e-22 107.5 54 87.0
MD16G1167100 Malus domestica HOM05D003261 ORTHO05D004230 3.4e-22 107.5 54 87.0
RcHm_v2.0_Chr4g0422851 Rosa chinensis HOM05D003261 ORTHO05D004230 5.7e-22 106.7 54 85.2
Lj7A515T86 Lonicera japonica HOM05D003261 ORTHO05D004230 7.5e-22 106.3 54 85.2
Lj6g0023887 Lotus japonicus HOM05D003261 ORTHO05D004230 7.5e-22 106.3 54 87.0
Prupe.1G134100 Prunus persica HOM05D003261 ORTHO05D004230 7.5e-22 106.3 54 87.0
CiPaw.02G081900 Carya illinoinensis HOM05D003261 ORTHO05D004230 2.2e-21 104.8 54 87.0
Peaxi162Scf00056g00015 Petunia axillaris HOM05D003261 ORTHO05D004230 2.2e-21 104.8 54 85.2
CsaV3_6G023930 Cucumis sativus L. HOM05D003261 ORTHO05D004230 2.8e-21 104.4 54 85.2
Gohir.A02G049900 Gossypium hirsutum HOM05D003261 ORTHO05D004230 2.8e-21 104.4 54 83.3
PSO170G4560 Papaver somniferum HOM05D003261 ORTHO05D004230 2.8e-21 104.4 54 83.3
PSO407G0331 Papaver somniferum HOM05D003261 ORTHO05D004230 2.8e-21 104.4 54 83.3
MELO3C021320.2 Cucumis melo HOM05D003261 ORTHO05D004230 3.7e-21 104.0 54 83.3
Gohir.D02G055000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 3.7e-21 104.0 54 83.3
Gohir.D09G239000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 3.7e-21 104.0 54 81.5
Gorai.005G060900 Gossypium raimondii HOM05D003261 ORTHO05D004230 3.7e-21 104.0 54 83.3
Gorai.006G261700 Gossypium raimondii HOM05D003261 ORTHO05D004230 3.7e-21 104.0 54 81.5
PGR004G2696 Punica granatum HOM05D003261 ORTHO05D004230 3.7e-21 104.0 54 83.3
TWI09G1311 Tripterygium wilfordii HOM05D003261 ORTHO05D004230 3.7e-21 104.0 54 83.3
Hma1.2p1_1185F.1_g264960 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 4.8e-21 103.6 54 81.5
ClCG06G005050 Citrullus lanatus HOM05D003261 ORTHO05D004230 6.3e-21 103.2 54 81.5
COL.COLO4_13845 Corchorus olitorius HOM05D003261 ORTHO05D004230 6.3e-21 103.2 54 81.5
Duzib052G0276 Durio zibethinus HOM05D003261 ORTHO05D004230 6.3e-21 103.2 54 79.6
Duzib151G0067 Durio zibethinus HOM05D003261 ORTHO05D004230 6.3e-21 103.2 54 81.5
HanXRQChr17g0561551 Helianthus annuus HOM05D003261 ORTHO05D004230 6.3e-21 103.2 54 83.3
Hma1.2p1_1807F.1_g303320 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 6.3e-21 103.2 53 81.1
Thecc.04G286600 Theobroma cacao HOM05D003261 ORTHO05D004230 6.3e-21 103.2 54 81.5
VMungo1309G2776 Vigna mungo HOM05D003261 ORTHO05D004230 6.3e-21 103.2 54 85.2
GSVIVG01035143001 Vitis vinifera HOM05D003261 ORTHO05D004230 6.3e-21 103.2 54 81.5
Haze_01185 Corylus avellana HOM05D003261 ORTHO05D004230 8.3e-21 102.8 54 81.5
Dinv29761 Davidia involucrata HOM05D003261 ORTHO05D004230 8.3e-21 102.8 54 83.3
arahy.Tifrunner.gnm1.ann1.9TJ054 Arachis hypogaea HOM05D003261 ORTHO05D004230 1.1e-20 102.4 54 83.3
arahy.Tifrunner.gnm1.ann1.JJQ0MC Arachis hypogaea HOM05D003261 ORTHO05D004230 1.1e-20 102.4 54 83.3
Glyma.09G043800 Glycine max HOM05D003261 ORTHO05D004230 1.1e-20 102.4 54 83.3
Glyma.15G149300 Glycine max HOM05D003261 ORTHO05D004230 1.1e-20 102.4 54 83.3
Gohir.A09G238100 Gossypium hirsutum HOM05D003261 ORTHO05D004230 1.1e-20 102.4 54 79.6
Manes.03G196900 Manihot esculenta HOM05D003261 ORTHO05D004230 1.1e-20 102.4 54 81.5
Sed0025564 Sechium edule HOM05D003261 ORTHO05D004230 1.1e-20 102.4 54 85.2
Solyc01g094480.4 Solanum lycopersicum HOM05D003261 ORTHO05D004230 1.1e-20 102.4 54 83.3
Sopen01g038290 Solanum pennellii HOM05D003261 ORTHO05D004230 1.1e-20 102.4 54 83.3
Nn3g21489 Nelumbo nucifera HOM05D003261 ORTHO05D004230 1.4e-20 102.1 54 81.5
Nn4g25790 Nelumbo nucifera HOM05D003261 ORTHO05D004230 1.4e-20 102.1 54 79.6
Phvul.009G249100 Phaseolus vulgaris HOM05D003261 ORTHO05D004230 1.4e-20 102.1 54 83.3
Rhsim04G0224200 Rhododendron simsii HOM05D003261 ORTHO05D004230 1.4e-20 102.1 54 81.5
vmacro08167 Vaccinium macrocarpon HOM05D003261 ORTHO05D004230 1.4e-20 102.1 54 81.5
CSS0009030 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 1.8e-20 101.7 54 79.6
CSS0013014 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 1.8e-20 101.7 54 79.6
Cpa.g.sc16.189 Carica papaya HOM05D003261 ORTHO05D004230 1.8e-20 101.7 54 83.3
Nitab4.5_0001251g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 1.8e-20 101.7 54 83.3
Nitab4.5_0003111g0030 Nicotiana tabacum HOM05D003261 ORTHO05D004230 1.8e-20 101.7 54 83.3
QL06p009632 Quercus lobata HOM05D003261 ORTHO05D004230 1.8e-20 101.7 53 81.1
TAR365G1013 Trochodendron aralioides HOM05D003261 ORTHO05D004230 1.8e-20 101.7 54 79.6
CANSAT78G0131 Cannabis sativa HOM05D003261 ORTHO05D004230 2.4e-20 101.3 54 79.6
Lalb_Chr18g0051601 Lupinus albus HOM05D003261 ORTHO05D004230 2.4e-20 101.3 54 83.3
Hund20540 Selenicereus undatus HOM05D003261 ORTHO05D004230 2.4e-20 101.3 54 79.6
TAR623G1368 Trochodendron aralioides HOM05D003261 ORTHO05D004230 2.4e-20 101.3 54 77.8
EL10Ac7g17420 Beta vulgaris HOM05D003261 ORTHO05D004230 3.1e-20 100.9 54 79.6
AUR62034658 Chenopodium quinoa HOM05D003261 ORTHO05D004230 3.1e-20 100.9 54 79.6
Eucgr.H03935 Eucalyptus grandis HOM05D003261 ORTHO05D004230 3.1e-20 100.9 54 81.5
MBI16_g12924_MAGBIO Magnolia biondii HOM05D003261 ORTHO05D004230 3.1e-20 100.9 54 79.6
Sabra10G0008000 Salix brachista HOM05D003261 ORTHO05D004230 3.1e-20 100.9 54 81.5
Atru.chr4.2874 Acer truncatum HOM05D003261 ORTHO05D004230 4.1e-20 100.5 54 81.5
Aqoxy5G00755 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 4.1e-20 100.5 54 77.8
MSTRG.20825 Avicennia marina HOM05D003261 ORTHO05D004230 4.1e-20 100.5 54 79.6
AUR62008590 Chenopodium quinoa HOM05D003261 ORTHO05D004230 5.4e-20 100.1 54 77.8
Ciclev10004853m.g Citrus clementina HOM05D003261 ORTHO05D004230 5.4e-20 100.1 54 77.8
Nitab4.5_0003111g0080 Nicotiana tabacum HOM05D003261 ORTHO05D004230 5.4e-20 100.1 53 83.0
ECA234G0824 Erigeron canadensis HOM05D003261 ORTHO05D004230 7.0e-20 99.8 51 82.4
CiPaw.01G147300 Carya illinoinensis HOM05D003261 ORTHO05D004230 9.1e-20 99.4 54 77.8
DCAR_008606 Daucus carota HOM05D003261 ORTHO05D004230 1.6e-19 98.6 54 75.9
Lsat_1_v5_gn_4_36321 Lactuca sativa HOM05D003261 ORTHO05D004230 1.6e-19 98.6 52 78.8
Rhsim06G0116500 Rhododendron simsii HOM05D003261 ORTHO05D004230 1.6e-19 98.6 54 79.6
SHI00253 Sapria himalayana HOM05D003261 ORTHO05D004230 1.6e-19 98.6 54 75.9
BcaC09g48619 Brassica carinata HOM05D003261 ORTHO05D004230 2.0e-19 98.2 54 79.6
A01p37650 Brassica napus HOM05D003261 ORTHO05D004230 2.0e-19 98.2 54 79.6
BolC1t04740H Brassica oleracea HOM05D003261 ORTHO05D004230 2.0e-19 98.2 54 79.6
BraA01t03826Z Brassica rapa HOM05D003261 ORTHO05D004230 2.0e-19 98.2 54 79.6
Carub.0007s2576 Capsella rubella HOM05D003261 ORTHO05D004230 2.0e-19 98.2 54 79.6
CARHR091900 Cardamine hirsuta HOM05D003261 ORTHO05D004230 2.0e-19 98.2 54 79.6
ECA234G3111 Erigeron canadensis HOM05D001191 ORTHO05D000979 2.0e-19 98.2 54 77.8
Lalb_Chr15g0083461 Lupinus albus HOM05D003261 ORTHO05D004230 2.0e-19 98.2 54 81.5
Peaxi162Scf00089g00028 Petunia axillaris HOM05D003261 ORTHO05D004230 2.0e-19 98.2 53 81.1
Sc19g0005390 Simmondsia chinensis HOM05D003261 ORTHO05D004230 2.0e-19 98.2 54 79.6
THA.LOC104820293 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 2.0e-19 98.2 54 74.1
Ah.08g212490 Amaranthus hybridus HOM05D003261 ORTHO05D004230 2.7e-19 97.8 54 75.9
AL7G39370 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 2.7e-19 97.8 54 77.8
Carub.0003s1638 Capsella rubella HOM05D003261 ORTHO05D004230 2.7e-19 97.8 54 77.8
SGA_v2.0_scaffold95G28842 Striga asiatica HOM05D003261 ORTHO05D004230 2.7e-19 97.8 54 77.8
unitig_8.g3803 Utricularia gibba HOM05D003261 ORTHO05D004230 2.7e-19 97.8 54 77.8
ATR0796G128 Amborella trichopoda HOM05D003261 ORTHO05D004230 3.5e-19 97.4 54 75.9
BcaNung00239 Brassica carinata HOM05D003261 ORTHO05D004230 3.5e-19 97.4 54 77.8
A09p49870 Brassica napus HOM05D003261 ORTHO05D004230 3.5e-19 97.4 54 79.6
BraA09t40438Z Brassica rapa HOM05D003261 ORTHO05D004230 3.5e-19 97.4 54 79.6
Migut.B01741 Erythranthe guttata HOM05D003261 ORTHO05D004230 3.5e-19 97.4 54 75.9
Actinidia40288 Actinidia chinensis HOM05D003261 ORTHO05D004230 4.5e-19 97.1 54 75.9
Aa31LG10G6240 Aethionema arabicum HOM05D003261 ORTHO05D004230 4.5e-19 97.1 54 77.8
AL3G29570 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 4.5e-19 97.1 54 77.8
CDE08G1027 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 4.5e-19 97.1 54 74.1
CDE09G0842 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 4.5e-19 97.1 54 74.1
Cc02_g37840 Coffea canephora HOM05D003261 ORTHO05D004230 4.5e-19 97.1 54 79.6
Thhalv10022263m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 4.5e-19 97.1 54 77.8
Potri.010G012800 Populus trichocarpa HOM05D003261 ORTHO05D004230 4.5e-19 97.1 54 74.1
SEGI_14553 Sequoiadendron giganteum HOM05D003261 ORTHO05D004230 4.5e-19 97.1 54 75.9
unitig_22.g5357 Utricularia gibba HOM05D003261 ORTHO05D004230 4.5e-19 97.1 54 75.9
Actinidia19581 Actinidia chinensis HOM05D003261 ORTHO05D004230 5.9e-19 96.7 54 74.1
CiPaw.14G132800 Carya illinoinensis HOM05D003261 ORTHO05D004230 5.9e-19 96.7 54 75.9
COL.COLO4_06938 Corchorus olitorius HOM05D003261 ORTHO05D004230 5.9e-19 96.7 52 76.9
Sp3g14940 Schrenkiella parvula HOM05D003261 ORTHO05D004230 5.9e-19 96.7 54 77.8
AT4G15900 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 7.7e-19 96.3 54 75.9
C01p47680 Brassica napus HOM05D003261 ORTHO05D004230 7.7e-19 96.3 54 77.8
CARHR290440 Cardamine hirsuta HOM05D003261 ORTHO05D004230 7.7e-19 96.3 54 75.9
Sp7g14350 Schrenkiella parvula HOM05D003261 ORTHO05D004230 7.7e-19 96.3 54 77.8
BcaC06g32973 Brassica carinata HOM05D003261 ORTHO05D004230 1.0e-18 95.9 54 75.9
BcaC06g33437 Brassica carinata HOM05D003261 ORTHO05D004230 1.0e-18 95.9 54 75.9
A03p49450 Brassica napus HOM05D003261 ORTHO05D004230 1.0e-18 95.9 54 75.9
C07p47500 Brassica napus HOM05D003261 ORTHO05D004230 1.0e-18 95.9 54 75.9
BolC7t45277H Brassica oleracea HOM05D003261 ORTHO05D004230 1.0e-18 95.9 54 75.9
BraA03t14046Z Brassica rapa HOM05D003261 ORTHO05D004230 1.0e-18 95.9 54 75.9
Thhalv10025068m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 1.0e-18 95.9 54 75.9
SalBow3G0655 Salvia bowleyana HOM05D003261 ORTHO05D004230 1.0e-18 95.9 54 74.1
SMO240G0024 Selaginella moellendorffii HOM05D003261 ORTHO05D004230 1.0e-18 95.9 54 74.1
AagrBONN_evm.TU.Sc2ySwM_228.4942 Anthoceros agrestis HOM05D003261 ORTHO05D004230 1.3e-18 95.5 54 72.2
MD16G1081900 Malus domestica HOM05D003261 ORTHO05D004230 1.7e-18 95.1 56 76.8
Prupe.6G318200 Prunus persica HOM05D003261 ORTHO05D004230 1.7e-18 95.1 53 77.4
Rhsim12G0061000 Rhododendron simsii HOM05D003261 ORTHO05D004230 1.7e-18 95.1 54 72.2
AT3G16650 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 3.8e-18 94.0 54 75.9
CiPaw.06G074500 Carya illinoinensis HOM05D003261 ORTHO05D004230 3.8e-18 94.0 54 74.1
Zm00001eb051300 Zea mays HOM05D003261 ORTHO05D004230 3.8e-18 94.0 54 74.1
HanXRQChr15g0490951 Helianthus annuus HOM05D003261 ORTHO05D004230 6.6e-18 93.2 54 74.1
Os03g0339100 Oryza sativa ssp. japonica HOM05D003261 ORTHO05D004230 6.6e-18 93.2 54 72.2
Pp3c16_8560 Physcomitrium patens HOM05D003261 ORTHO05D004230 8.6e-18 92.8 54 74.1
THA.LOC104821781 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 1.1e-17 92.4 54 70.4
Pp3c5_15520 Physcomitrium patens HOM05D003261 ORTHO05D004230 1.5e-17 92.0 54 72.2
HPP92_023226 Vanilla planifolia HOM05D003261 ORTHO05D004230 1.9e-17 91.7 54 70.4
Mapoly0016s0006 Marchantia polymorpha HOM05D003261 ORTHO05D004230 2.5e-17 91.3 54 68.5
Medtr2g019400 Medicago truncatula HOM05D003261 ORTHO05D004230 3.3e-17 90.9 51 78.4
Peaxi162Scf00858g00015 Petunia axillaris HOM05D003261 ORTHO05D004230 3.3e-17 90.9 54 75.9
BcaC09g50284 Brassica carinata HOM05D003261 ORTHO05D004230 5.5e-17 90.1 52 75.0
C01p26990 Brassica napus HOM05D003261 ORTHO05D004230 5.5e-17 90.1 52 75.0
BolC1t02648H Brassica oleracea HOM05D003261 ORTHO05D004230 5.5e-17 90.1 52 75.0
RcHm_v2.0_Chr4g0429821 Rosa chinensis HOM05D003261 ORTHO05D004230 7.2e-17 89.7 54 75.9
Nitab4.5_0014715g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 1.2e-16 89.0 54 74.1
Aa31LG8G3770 Aethionema arabicum HOM05D003261 ORTHO05D004230 2.1e-16 88.2 53 71.7
CBR_g46442 Chara braunii HOM05D003261 ORTHO05D004230 3.6e-16 87.4 54 64.8
MCO14G267 Micromonas commoda HOM05D003261 ORTHO05D004230 1.5e-14 82.0 55 69.1
Cre10.g446900 Chlamydomonas reinhardtii HOM05D003261 ORTHO05D004230 3.7e-13 77.4 55 63.6
PSO478G1326 Papaver somniferum HOM05D003261 ORTHO05D004230 3.7e-13 77.4 46 73.9
Cfa002537 Carpinus fangiana HOM05D003261 ORTHO05D004230 4.9e-13 77.0 43 79.1
PRCOL_00003913 Prasinoderma coloniale HOM05D003261 ORTHO05D004230 1.1e-12 75.9 55 61.8
TPR.G39909 Trifolium pratense HOM05D003261 ORTHO05D004230 7.0e-12 73.2 35 94.3
FAN07G0399 Fragaria x ananassa HOM05D003261 ORTHO05D004230 8.6e-10 66.2 36 77.8
FvH4_4g23450 Fragaria vesca HOM05D003261 ORTHO05D004230 3.3e-09 64.3 36 75.0
FAN12G3743 Fragaria x ananassa HOM05D003261 ORTHO05D004230 3.3e-09 64.3 36 75.0
Aqoxy3G03984 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 5.2e-07 57.0 31 74.2
Peaxi162Scf00409g00039 Petunia axillaris HOM05D003261 ORTHO05D004230 8.9e-07 56.2 33 69.7
PGSC0003DMG400008918 Solanum tuberosum HOM05D003261 ORTHO05D004230 1.2e-06 55.8 31 77.4
MD05G1262800 Malus domestica HOM05D003261 ORTHO05D004230 3.4e-06 54.3 38 71.1
Solyc09g010620.1 Solanum lycopersicum HOM05D003261 ORTHO05D014021 3.4e-06 54.3 31 74.2
DCAR_003343 Daucus carota HOM05D003261 ORTHO05D004230 5.8e-06 53.5 30 70.0
DCAR_030165 Daucus carota HOM05D003261 ORTHO05D004230 9.8e-06 52.8 31 61.3


User provided reference genes

Program Settings