Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G73 Trifolium pratense HOM05D004526 ORTHO05D005548 1.3e-41 172.6 84 100.0
Psat6g239400 Pisum sativum HOM05D004526 ORTHO05D005548 2.1e-31 138.7 74 93.2
Glyma.20G242900 Glycine max HOM05D004526 ORTHO05D005548 8.3e-28 126.7 74 87.8
VMungo0720G0008 Vigna mungo HOM05D004526 ORTHO05D005548 8.3e-28 126.7 74 87.8
Ca_11340_v3 Cicer arietinum L. HOM05D004526 ORTHO05D005548 2.0e-26 122.1 75 88.0
Phvul.007G007300 Phaseolus vulgaris HOM05D004526 ORTHO05D005548 2.0e-26 122.1 74 83.8
Medtr1g116060 Medicago truncatula HOM05D004526 ORTHO05D005548 5.6e-24 114.0 74 83.8
Lalb_Chr21g0307111 Lupinus albus HOM05D004526 ORTHO05D005548 2.8e-23 111.7 74 75.7
Glyma.10G292700 Glycine max HOM05D004526 ORTHO05D005548 8.1e-23 110.2 74 77.0
PSO017G3834 Papaver somniferum HOM05D004526 ORTHO05D005548 1.8e-22 109.0 74 73.0
Lj5g0010112 Lotus japonicus HOM05D004526 ORTHO05D004861 6.8e-22 107.1 81 72.8
PSO478G0915 Papaver somniferum HOM05D004526 ORTHO05D005548 1.2e-21 106.3 74 73.0
CiPaw.04G020200 Carya illinoinensis HOM05D004526 ORTHO05D005548 1.5e-21 105.9 74 70.3
RcHm_v2.0_Chr2g0169161 Rosa chinensis HOM05D004526 ORTHO05D005548 4.4e-21 104.4 53 90.6
Manes.17G021000 Manihot esculenta HOM05D004526 ORTHO05D005548 7.5e-21 103.6 74 73.0
GSVIVG01032607001 Vitis vinifera HOM05D004526 ORTHO05D005548 7.5e-21 103.6 56 83.9
Cpa.g.sc14.41 Carica papaya HOM05D004526 ORTHO05D005548 9.9e-21 103.2 74 74.3
FAN09G4881 Fragaria x ananassa HOM05D004526 ORTHO05D005548 9.9e-21 103.2 53 88.7
FAN14G2223 Fragaria x ananassa HOM05D004526 ORTHO05D005548 9.9e-21 103.2 53 88.7
FAN02G4162 Fragaria x ananassa HOM05D004526 ORTHO05D005548 1.3e-20 102.8 53 88.7
Solyc01g009290.4 Solanum lycopersicum HOM05D004526 ORTHO05D005548 1.3e-20 102.8 76 67.1
Sopen01g004780 Solanum pennellii HOM05D004526 ORTHO05D005548 1.3e-20 102.8 76 67.1
PGSC0003DMG400030284 Solanum tuberosum HOM05D004526 ORTHO05D005548 1.3e-20 102.8 76 67.1
TAR622G0275 Trochodendron aralioides HOM05D004526 ORTHO05D005548 1.3e-20 102.8 74 70.3
CSS0019571 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 1.7e-20 102.4 76 71.1
CAN.G226.26 Capsicum annuum HOM05D004526 ORTHO05D005548 1.7e-20 102.4 76 68.4
Migut.E01591 Erythranthe guttata HOM05D004526 ORTHO05D005548 1.7e-20 102.4 74 66.2
Hund13244 Selenicereus undatus HOM05D004526 ORTHO05D005548 1.7e-20 102.4 61 78.7
MSTRG.1703 Avicennia marina HOM05D004526 ORTHO05D005548 2.2e-20 102.1 76 69.7
Ciclev10011737m.g Citrus clementina HOM05D004526 ORTHO05D005548 2.2e-20 102.1 74 71.6
FAN05G4948 Fragaria x ananassa HOM05D004526 ORTHO05D005548 2.2e-20 102.1 53 86.8
PGR142G4111 Punica granatum HOM05D004526 ORTHO05D005548 2.9e-20 101.7 74 71.6
Atru.chr8.1914 Acer truncatum HOM05D004526 ORTHO05D005548 4.9e-20 100.9 74 68.9
Lj7A401T78 Lonicera japonica HOM05D004526 ORTHO05D005548 4.9e-20 100.9 76 67.1
Oeu018626.2 Olea europaea HOM05D004526 ORTHO05D005548 4.9e-20 100.9 74 70.3
EL10Ac2g02933 Beta vulgaris HOM05D004526 ORTHO05D005548 6.4e-20 100.5 52 86.5
Nitab4.5_0001504g0050 Nicotiana tabacum HOM05D004526 ORTHO05D005548 6.4e-20 100.5 76 65.8
Haze_14584 Corylus avellana HOM05D004526 ORTHO05D005548 8.3e-20 100.1 74 66.2
CsaV3_5G037880 Cucumis sativus L. HOM05D004526 ORTHO05D005548 8.3e-20 100.1 74 68.9
Prupe.3G272100 Prunus persica HOM05D004526 ORTHO05D005548 8.3e-20 100.1 52 90.4
PGR142G2860 Punica granatum HOM05D004526 ORTHO05D005548 8.3e-20 100.1 74 70.3
unitig_578.g15969 Utricularia gibba HOM05D004526 ORTHO05D005548 8.3e-20 100.1 74 67.6
Cfa007509 Carpinus fangiana HOM05D004526 ORTHO05D005548 1.1e-19 99.8 74 66.2
MELO3C021974.2 Cucumis melo HOM05D004526 ORTHO05D005548 1.1e-19 99.8 74 68.9
ClCG09G018400 Citrullus lanatus HOM05D004526 ORTHO05D005548 1.4e-19 99.4 74 68.9
FvH4_6g49260 Fragaria vesca HOM05D004526 ORTHO05D005548 1.4e-19 99.4 53 86.8
Nitab4.5_0000157g0090 Nicotiana tabacum HOM05D004526 ORTHO05D005548 1.4e-19 99.4 84 61.9
Sed0004091 Sechium edule HOM05D004526 ORTHO05D005548 1.4e-19 99.4 74 68.9
Dinv07025 Davidia involucrata HOM05D004526 ORTHO05D005548 1.9e-19 99.0 76 69.7
Sabra17G0069000 Salix brachista HOM05D004526 ORTHO05D005548 1.9e-19 99.0 74 68.9
THA.LOC104811064 Tarenaya hassleriana HOM05D004526 ORTHO05D005548 1.9e-19 99.0 74 67.6
Actinidia06070 Actinidia chinensis HOM05D004526 ORTHO05D005548 2.4e-19 98.6 74 70.3
Eucgr.I01917 Eucalyptus grandis HOM05D004526 ORTHO05D005548 2.4e-19 98.6 74 70.3
Nn4g23045 Nelumbo nucifera HOM05D004526 ORTHO05D005548 2.4e-19 98.6 76 68.4
Potri.017G077200 Populus trichocarpa HOM05D004526 ORTHO05D005548 2.4e-19 98.6 74 68.9
Thecc.04G074400 Theobroma cacao HOM05D004526 ORTHO05D005548 2.4e-19 98.6 77 68.8
TAR481G0009 Trochodendron aralioides HOM05D004526 ORTHO05D005548 2.4e-19 98.6 74 67.6
arahy.Tifrunner.gnm1.ann1.S1RF4U Arachis hypogaea HOM05D004526 ORTHO05D005548 3.2e-19 98.2 64 79.7
Gohir.D04G050600 Gossypium hirsutum HOM05D004526 ORTHO05D005548 4.1e-19 97.8 78 67.9
Gorai.012G056100 Gossypium raimondii HOM05D004526 ORTHO05D005548 4.1e-19 97.8 78 67.9
Duzib147G0459 Durio zibethinus HOM05D004526 ORTHO05D005548 5.4e-19 97.4 75 66.7
Lsat_1_v5_gn_4_176840 Lactuca sativa HOM05D004526 ORTHO05D005548 7.1e-19 97.1 76 68.4
HanXRQChr09g0265571 Helianthus annuus HOM05D004526 ORTHO05D005548 9.2e-19 96.7 74 68.9
Aqoxy3G03268 Aquilegia oxysepala HOM05D004526 ORTHO05D005548 2.1e-18 95.5 74 66.2
arahy.Tifrunner.gnm1.ann1.31SG4H Arachis hypogaea HOM05D004526 ORTHO05D005548 2.7e-18 95.1 64 78.1
MD17G1047000 Malus domestica HOM05D004526 ORTHO05D005548 2.7e-18 95.1 52 82.7
PSO832G1140 Papaver somniferum HOM05D004526 ORTHO05D005548 2.7e-18 95.1 76 68.4
QL02p080561 Quercus lobata HOM05D004526 ORTHO05D005548 2.7e-18 95.1 73 63.0
PSO591G0197 Papaver somniferum HOM05D004526 ORTHO05D005548 3.5e-18 94.7 76 67.1
Actinidia27487 Actinidia chinensis HOM05D004526 ORTHO05D005548 4.6e-18 94.4 72 69.4
CiPaw.03G030200 Carya illinoinensis HOM05D004526 ORTHO05D005548 4.6e-18 94.4 59 76.3
Cc08_g10980 Coffea canephora HOM05D004526 ORTHO05D005548 4.6e-18 94.4 75 68.0
Gohir.A05G364100 Gossypium hirsutum HOM05D004526 ORTHO05D005548 4.6e-18 94.4 78 66.7
Sc11g0006930 Simmondsia chinensis HOM05D004526 ORTHO05D005548 4.6e-18 94.4 55 80.0
MD09G1046200 Malus domestica HOM05D004526 ORTHO05D005548 6.0e-18 94.0 52 80.8
vmacro05738 Vaccinium macrocarpon HOM05D004526 ORTHO05D005548 6.0e-18 94.0 74 62.2
arahy.Tifrunner.gnm1.ann1.PC3EEW Arachis hypogaea HOM05D004526 ORTHO05D005548 7.8e-18 93.6 64 76.6
DCAR_021672 Daucus carota HOM05D004526 ORTHO05D005548 7.8e-18 93.6 61 70.5
Peaxi162Scf00345g00811 Petunia axillaris HOM05D004526 ORTHO05D005548 7.8e-18 93.6 76 63.2
RhsimUnG0055200 Rhododendron simsii HOM05D004526 ORTHO05D005548 7.8e-18 93.6 88 56.8
BcaB04g19307 Brassica carinata HOM05D004526 ORTHO05D005548 1.7e-17 92.4 82 63.4
Dinv06512 Davidia involucrata HOM05D004526 ORTHO05D005548 1.7e-17 92.4 80 62.5
arahy.Tifrunner.gnm1.ann1.C6A6VI Arachis hypogaea HOM05D004526 ORTHO05D005548 2.3e-17 92.0 64 75.0
A03p33780 Brassica napus HOM05D004526 ORTHO05D005548 2.3e-17 92.0 82 62.2
BraA03t12552Z Brassica rapa HOM05D004526 ORTHO05D005548 2.3e-17 92.0 82 62.2
SalBow1G4721 Salvia bowleyana HOM05D004526 ORTHO05D005548 3.0e-17 91.7 76 64.5
Nn3g17130 Nelumbo nucifera HOM05D004526 ORTHO05D005548 3.9e-17 91.3 52 80.8
Aa31LG5G15080 Aethionema arabicum HOM05D004526 ORTHO05D005548 5.1e-17 90.9 78 64.1
BcaC01g04355 Brassica carinata HOM05D004526 ORTHO05D005548 5.1e-17 90.9 82 61.0
C03p41080 Brassica napus HOM05D004526 ORTHO05D005548 5.1e-17 90.9 82 61.0
BolC3t16397H Brassica oleracea HOM05D004526 ORTHO05D005548 5.1e-17 90.9 82 61.0
Thhalv10020725m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 5.1e-17 90.9 82 62.2
CARHR078910 Cardamine hirsuta HOM05D004526 ORTHO05D005548 6.6e-17 90.5 75 65.3
AT3G04680 Arabidopsis thaliana HOM05D004526 ORTHO05D005548 8.6e-17 90.1 75 64.0
COL.COLO4_25181 Corchorus olitorius HOM05D004526 ORTHO05D005548 8.6e-17 90.1 77 64.9
Sp3g03530 Schrenkiella parvula HOM05D004526 ORTHO05D005548 1.9e-16 89.0 77 63.6
Carub.0003s0384 Capsella rubella HOM05D004526 ORTHO05D005548 2.5e-16 88.6 75 62.7
AL3G14740 Arabidopsis lyrata HOM05D004526 ORTHO05D005548 4.3e-16 87.8 81 60.5
TWI60G0005 Tripterygium wilfordii HOM05D004526 ORTHO05D005548 9.5e-16 86.7 74 64.9
HanXRQChr12g0357441 Helianthus annuus HOM05D004526 ORTHO05D005548 2.8e-15 85.1 66 65.2
CDE04G0248 Ceratophyllum demersum HOM05D004526 ORTHO05D005548 4.7e-15 84.3 52 75.0
ATR0051G026 Amborella trichopoda HOM05D004526 ORTHO05D005548 8.1e-15 83.6 53 77.4
TAR305G0002 Trochodendron aralioides HOM05D004526 ORTHO05D005548 8.1e-15 83.6 71 59.2
SMO165G0052 Selaginella moellendorffii HOM05D004526 ORTHO05D005548 1.1e-14 83.2 60 60.0
SEGI_10762 Sequoiadendron giganteum HOM05D004526 ORTHO05D005548 1.8e-14 82.4 61 65.6
HPP92_012836 Vanilla planifolia HOM05D004526 ORTHO05D005548 2.4e-14 82.0 53 69.8
SHI08813 Sapria himalayana HOM05D004526 ORTHO05D005548 4.0e-14 81.3 56 66.1
Actinidia23573 Actinidia chinensis HOM05D004526 ORTHO05D005548 6.8e-14 80.5 68 63.2
AagrBONN_evm.TU.Sc2ySwM_344.3939 Anthoceros agrestis HOM05D004526 ORTHO05D005548 6.8e-14 80.5 70 57.1
Sp1g35350 Schrenkiella parvula HOM05D004526 ORTHO05D005548 1.7e-12 75.9 68 61.8
AT5G39930 Arabidopsis thaliana HOM05D004526 ORTHO05D005548 3.8e-12 74.7 53 64.2
ECA232G3358 Erigeron canadensis HOM05D004526 ORTHO05D005548 4.9e-12 74.3 74 52.7
MD09G1046100 Malus domestica HOM05D004526 ORTHO05D005548 1.4e-11 72.8 43 74.4
MD09G1046500 Malus domestica HOM05D004526 ORTHO05D005548 1.9e-11 72.4 47 72.3
Mapoly0016s0080 Marchantia polymorpha HOM05D004526 ORTHO05D005548 3.2e-11 71.6 53 56.6
Zm00001eb205260 Zea mays HOM05D004526 ORTHO05D005548 3.2e-11 71.6 69 55.1
Os02g0217500 Oryza sativa ssp. japonica HOM05D004526 ORTHO05D005548 7.1e-11 70.5 63 55.6
AL7G50210 Arabidopsis lyrata HOM05D004526 ORTHO05D005548 2.7e-10 68.6 53 60.4
CSS0012548 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 3.5e-10 68.2 39 79.5
Carub.0007s3580 Capsella rubella HOM05D004526 ORTHO05D005548 3.5e-10 68.2 54 63.0
CARHR262250 Cardamine hirsuta HOM05D004526 ORTHO05D005548 7.8e-10 67.0 52 55.8
HPP92_009728 Vanilla planifolia HOM05D004526 ORTHO05D005548 1.0e-09 66.6 48 64.6
arahy.Tifrunner.gnm1.ann1.TUDV7U Arachis hypogaea HOM05D004526 ORTHO05D005548 1.3e-09 66.2 62 62.9
BcaB06g27742 Brassica carinata HOM05D004526 ORTHO05D005548 1.7e-09 65.9 53 52.8
Sp7g01800 Schrenkiella parvula HOM05D004526 ORTHO05D005548 1.7e-09 65.9 53 54.7
SpUn0485_0020 Schrenkiella parvula HOM05D004526 ORTHO05D005548 1.7e-09 65.9 74 44.6
BcaC02g08842 Brassica carinata HOM05D004526 ORTHO05D005548 3.0e-09 65.1 75 45.3
C04p49900 Brassica napus HOM05D004526 ORTHO05D005548 3.0e-09 65.1 75 45.3
CSS0008092 Camellia sinensis var. sinensis HOM05D004526 ORTHO05D005548 8.7e-09 63.5 38 76.3
Thhalv10028283m.g Eutrema salsugineum HOM05D004526 ORTHO05D005548 5.6e-08 60.8 50 52.0
A04p15620 Brassica napus HOM05D004526 ORTHO05D005548 1.2e-07 59.7 75 41.3
BraA04t17197Z Brassica rapa HOM05D004526 ORTHO05D005548 1.2e-07 59.7 75 41.3
BolC4t26581H Brassica oleracea HOM05D004526 ORTHO05D005548 6.2e-07 57.4 48 50.0
CBR_g42172 Chara braunii HOM05D004526 ORTHO05D005548 8.1e-07 57.0 62 48.4


User provided reference genes

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