Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6035 Trifolium pratense HOM05D001734 ORTHO05D003483 0.0e+00 1953.3 1005 100.0
Medtr3g077860 Medicago truncatula HOM05D001734 ORTHO05D003483 0.0e+00 1588.9 1002 81.8
Glyma.04G182900 Glycine max HOM05D001734 ORTHO05D003483 0.0e+00 1385.2 1004 71.6
Phvul.009G178400 Phaseolus vulgaris HOM05D001734 ORTHO05D003483 0.0e+00 1340.1 1004 69.4
Lj1g0011912 Lotus japonicus HOM05D001734 ORTHO05D003483 0.0e+00 1339.3 1004 69.8
Lalb_Chr08g0236501 Lupinus albus HOM05D001734 ORTHO05D003483 0.0e+00 1320.4 1009 68.5
arahy.Tifrunner.gnm1.ann1.2D0TBT Arachis hypogaea HOM05D001734 ORTHO05D003483 0.0e+00 1244.6 1005 64.6
QL10p011601 Quercus lobata HOM05D001734 ORTHO05D003483 6.6e-289 997.7 1054 52.5
Prupe.5G173600 Prunus persica HOM05D001734 ORTHO05D003483 2.4e-286 989.2 1004 54.3
MD06G1173700 Malus domestica HOM05D001734 ORTHO05D003483 4.0e-286 988.4 1001 53.6
CiPaw.11G026100 Carya illinoinensis HOM05D001734 ORTHO05D003483 3.4e-285 985.3 1005 54.1
Atru.chr9.2479 Acer truncatum HOM05D001734 ORTHO05D003483 1.7e-281 973.0 1002 53.1
Haze_07473 Corylus avellana HOM05D001734 ORTHO05D003483 3.6e-279 965.3 1053 52.3
Potri.015G076650 Populus trichocarpa HOM05D001734 ORTHO05D003483 6.4e-276 954.5 1007 51.7
Dinv20652 Davidia involucrata HOM05D001734 ORTHO05D003483 8.4e-276 954.1 1007 52.1
COL.COLO4_30039 Corchorus olitorius HOM05D001734 ORTHO05D003483 2.4e-275 952.6 1023 51.7
Cfa019134 Carpinus fangiana HOM05D001734 ORTHO05D003483 7.1e-275 951.0 1006 53.5
Thecc.03G012800 Theobroma cacao HOM05D001734 ORTHO05D003483 1.2e-274 950.3 1009 51.7
RcHm_v2.0_Chr6g0271131 Rosa chinensis HOM05D001734 ORTHO05D003483 3.5e-274 948.7 1000 53.0
FvH4_2g11670 Fragaria vesca HOM05D001734 ORTHO05D003483 4.5e-269 931.8 1000 51.6
Gohir.A09G171700 Gossypium hirsutum HOM05D001734 ORTHO05D003483 5.8e-269 931.4 1003 50.8
Manes.06G105000 Manihot esculenta HOM05D001734 ORTHO05D003483 6.4e-268 927.9 1010 50.0
Gohir.D09G167401 Gossypium hirsutum HOM05D001734 ORTHO05D003483 8.4e-268 927.5 1003 50.8
Duzib084G0583 Durio zibethinus HOM05D001734 ORTHO05D003483 7.1e-267 924.5 1017 50.8
FAN15G3378 Fragaria x ananassa HOM05D001734 ORTHO05D003483 4.6e-266 921.8 998 51.3
GSVIVG01007755001 Vitis vinifera HOM05D001734 ORTHO05D003483 1.8e-265 919.8 990 50.9
CANSAT80G1574 Cannabis sativa HOM05D001734 ORTHO05D003483 3.7e-263 912.1 1007 51.1
Gorai.006G189100 Gossypium raimondii HOM05D001734 ORTHO05D003483 2.4e-262 909.4 995 50.5
Ciclev10018427m.g Citrus clementina HOM05D001734 ORTHO05D003483 9.0e-262 907.5 989 51.4
TWI14G0283 Tripterygium wilfordii HOM05D001734 ORTHO05D003483 1.2e-261 907.1 1002 49.1
Actinidia19322 Actinidia chinensis HOM05D001734 ORTHO05D003483 3.8e-260 902.1 1008 49.6
Sabra15G0101700 Salix brachista HOM05D001734 ORTHO05D003483 1.3e-252 877.1 1131 45.6
FAN24G1896 Fragaria x ananassa HOM05D001734 ORTHO05D003483 5.5e-251 871.7 998 50.2
PGR044G0033 Punica granatum HOM05D001734 ORTHO05D003483 5.7e-248 861.7 1017 48.0
PSO063G0326 Papaver somniferum HOM05D001734 ORTHO05D003483 5.9e-245 851.7 1005 47.9
PSO063G7150 Papaver somniferum HOM05D001734 ORTHO05D003483 8.5e-244 847.8 1007 48.0
Nn4g22757 Nelumbo nucifera HOM05D001734 ORTHO05D003483 5.1e-241 838.6 1008 47.8
Eucgr.K02842 Eucalyptus grandis HOM05D001734 ORTHO05D003483 3.3e-240 835.9 997 47.1
Migut.I00009 Erythranthe guttata HOM05D001734 ORTHO05D003483 5.7e-240 835.1 1002 46.5
Sc04g0001800 Simmondsia chinensis HOM05D001734 ORTHO05D003483 5.7e-240 835.1 1006 47.3
Sopen03g032020 Solanum pennellii HOM05D001734 ORTHO05D003483 7.4e-240 834.7 1002 46.9
Aqoxy3G02937 Aquilegia oxysepala HOM05D001734 ORTHO05D003483 1.1e-238 830.9 1006 47.2
Ca_16176_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 1.4e-238 830.5 605 71.9
SalBow5G1563 Salvia bowleyana HOM05D001734 ORTHO05D003483 1.2e-237 827.4 1003 46.2
HanXRQChr02g0036361 Helianthus annuus HOM05D001734 ORTHO05D003483 2.2e-236 823.2 1015 46.2
ECA247G1446 Erigeron canadensis HOM05D001734 ORTHO05D003483 1.1e-235 820.8 1016 47.0
MSTRG.11455 Avicennia marina HOM05D001734 ORTHO05D003483 2.5e-235 819.7 1012 46.3
Sed0023277 Sechium edule HOM05D001734 ORTHO05D003483 2.5e-235 819.7 1018 47.1
Cc04_g14140 Coffea canephora HOM05D001734 ORTHO05D003483 3.9e-233 812.4 986 46.2
Oeu016387.4 Olea europaea HOM05D001734 ORTHO05D003483 5.7e-232 808.5 987 46.3
MELO3C017087.2 Cucumis melo HOM05D001734 ORTHO05D003483 8.2e-231 804.7 1017 46.6
Lsat_1_v5_gn_1_27061 Lactuca sativa HOM05D001734 ORTHO05D003483 1.1e-230 804.3 1009 46.2
Thhalv10010050m.g Eutrema salsugineum HOM05D001734 ORTHO05D003483 1.2e-229 800.8 1003 45.6
Nitab4.5_0000785g0010 Nicotiana tabacum HOM05D001734 ORTHO05D003483 1.5e-229 800.4 972 47.0
A06p27460 Brassica napus HOM05D001734 ORTHO05D003483 5.9e-229 798.5 1004 45.6
BraA06t25686Z Brassica rapa HOM05D001734 ORTHO05D003483 5.9e-229 798.5 1004 45.6
Sp5g13840 Schrenkiella parvula HOM05D001734 ORTHO05D003483 8.5e-228 794.7 1003 44.8
FAN05G4580 Fragaria x ananassa HOM05D001734 ORTHO05D003483 1.1e-227 794.3 980 48.1
Carub.0005s1431 Capsella rubella HOM05D001734 ORTHO05D003483 1.4e-227 793.9 1003 45.3
C03p66700 Brassica napus HOM05D001734 ORTHO05D003483 1.9e-227 793.5 1003 45.8
CsaV3_1G001470 Cucumis sativus L. HOM05D001734 ORTHO05D003483 5.5e-227 792.0 1016 46.3
vmacro19388 Vaccinium macrocarpon HOM05D001734 ORTHO05D003483 1.0e-225 787.7 1061 44.6
CARHR156920 Cardamine hirsuta HOM05D001734 ORTHO05D003483 2.3e-225 786.6 1005 45.0
DCAR_026136 Daucus carota HOM05D001734 ORTHO05D003483 6.7e-225 785.0 1017 45.4
AL5G27530 Arabidopsis lyrata HOM05D001734 ORTHO05D003483 1.5e-224 783.9 1003 45.2
BolC3t18938H Brassica oleracea HOM05D001734 ORTHO05D003483 4.4e-224 782.3 1021 45.0
AT3G48190 Arabidopsis thaliana HOM05D001734 ORTHO05D003483 5.0e-220 768.8 998 44.8
THA.LOC104818218 Tarenaya hassleriana HOM05D001734 ORTHO05D003483 3.2e-219 766.1 999 43.5
Lj9A448G32 Lonicera japonica HOM05D001734 ORTHO05D003483 9.4e-219 764.6 861 49.2
Aa31LG4G16790 Aethionema arabicum HOM05D001734 ORTHO05D003483 1.2e-216 757.7 1033 43.5
Peaxi162Scf00009g00112 Petunia axillaris HOM05D001734 ORTHO05D003483 9.7e-216 754.6 1007 44.8
CAN.G1305.19 Capsicum annuum HOM05D001734 ORTHO05D003483 4.1e-214 749.2 854 48.8
SGA_v2.0_scaffold90G27914 Striga asiatica HOM05D001734 ORTHO05D003483 6.8e-209 731.9 1016 43.7
ClCG06G017040 Citrullus lanatus HOM05D001734 ORTHO05D003483 3.1e-198 696.4 1041 41.6
EL10Ac5g10743 Beta vulgaris HOM05D001734 ORTHO05D003483 4.1e-198 696.0 1008 43.4
VMungo1309G2093 Vigna mungo HOM05D001734 ORTHO05D003483 4.9e-191 672.5 636 58.8
ATR0730G231 Amborella trichopoda HOM05D001734 ORTHO05D003483 1.7e-188 664.1 978 40.9
Rhsim08G0172200 Rhododendron simsii HOM05D001734 ORTHO05D003483 4.1e-182 642.9 806 46.7
Os01g0106700 Oryza sativa ssp. japonica HOM05D001734 ORTHO05D003483 7.8e-165 585.5 1012 37.2
Nitab4.5_0000984g0090 Nicotiana tabacum HOM05D001734 ORTHO05D003483 9.0e-161 572.0 1112 35.6
Zm00001eb126710 Zea mays HOM05D001734 ORTHO05D003483 2.4e-158 563.9 1029 36.8
arahy.Tifrunner.gnm1.ann1.0L1HI6 Arachis hypogaea HOM05D001734 ORTHO05D003483 1.8e-153 547.7 353 75.9
CSS0012833 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 2.6e-152 543.9 700 46.0
CDE07G1059 Ceratophyllum demersum HOM05D001734 ORTHO05D003483 4.8e-146 523.1 920 37.6
Psat5g114800 Pisum sativum HOM05D001734 ORTHO05D003483 5.8e-144 516.2 305 85.2
AUR62030960 Chenopodium quinoa HOM05D001734 ORTHO05D003483 2.1e-125 454.5 828 37.6
AUR62008208 Chenopodium quinoa HOM05D001734 ORTHO05D003483 3.6e-125 453.8 829 37.2
VMungo1309G1151 Vigna mungo HOM05D001734 ORTHO05D003483 6.1e-125 453.0 304 72.0
TAR629G1256 Trochodendron aralioides HOM05D001734 ORTHO05D003483 3.4e-120 437.2 349 61.3
Pp3c2_23700 Physcomitrium patens HOM05D001734 ORTHO05D003483 7.7e-120 436.0 1040 31.4
Mapoly0081s0051 Marchantia polymorpha HOM05D001734 ORTHO05D003483 1.6e-101 375.2 697 33.0
unitig_0.g1441 Utricularia gibba HOM05D001734 ORTHO05D003483 4.0e-100 370.5 631 37.7
Rhsim08G0157900 Rhododendron simsii HOM05D001734 ORTHO05D003483 8.8e-100 369.4 905 32.8
HPP92_004845 Vanilla planifolia HOM05D002152 ORTHO05D003483 4.5e-88 330.5 729 33.9
AagrBONN_evm.TU.Sc2ySwM_117.1596 Anthoceros agrestis HOM05D001734 ORTHO05D003483 2.9e-87 327.8 734 31.6
Hma1.2p1_0701F.1_g205860 Hydrangea macrophylla HOM05D001734 ORTHO05D003483 1.2e-75 289.3 503 37.2
CBR_g290 Chara braunii HOM05D001734 ORTHO05D003483 2.6e-75 288.1 493 33.3
TPR.G29226 Trifolium pratense HOM05D001734 ORTHO05D003483 1.5e-70 272.3 182 78.6
Ca_05696_v3 Cicer arietinum L. HOM05D001734 ORTHO05D003483 9.5e-70 269.6 183 77.6
Solyc03g112950.4 Solanum lycopersicum HOM05D001734 ORTHO05D003483 1.4e-60 239.2 207 58.5
SEGI_29837 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 1.6e-53 215.7 250 45.2
TPR.G29227 Trifolium pratense HOM05D001734 ORTHO05D003483 4.6e-48 197.6 101 94.1
HPP92_004868 Vanilla planifolia HOM05D001734 ORTHO05D003483 3.0e-47 194.9 231 45.0
Cpa.g.sc76.49 Carica papaya HOM05D001734 ORTHO05D003483 2.2e-42 178.7 279 40.1
SEGI_22749 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 2.2e-42 178.7 164 51.8
SHI17001 Sapria himalayana HOM05D001734 ORTHO05D003483 1.4e-36 159.5 169 49.7
CSS0037969 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D003483 7.9e-32 143.7 108 64.8
Cpa.g.sc76.53 Carica papaya HOM05D001734 ORTHO05D003483 6.9e-28 130.6 96 66.7
SEGI_30734 Sequoiadendron giganteum HOM05D001734 ORTHO05D003483 1.6e-24 119.4 111 54.1
SHI17002 Sapria himalayana HOM05D001734 ORTHO05D003483 1.8e-23 115.9 148 43.9
QL01p024072 Quercus lobata HOM05D001734 ORTHO05D020518 1.3e-21 109.8 677 23.3
CAN.G853.42 Capsicum annuum HOM05D001734 ORTHO05D003483 3.7e-21 108.2 125 43.2
SHI17003 Sapria himalayana HOM05D001734 ORTHO05D003483 6.2e-21 107.5 89 60.7
VMungo0464G0876 Vigna mungo HOM05D001734 ORTHO05D435229 7.2e-17 94.0 53 77.4
BcaNung06699 Brassica carinata HOM05D001734 ORTHO05D003483 3.0e-15 88.6 167 34.7
QL07p004594 Quercus lobata HOM05D001734 ORTHO05D020518 9.7e-14 83.6 120 40.8
QL07p004626 Quercus lobata HOM05D001734 ORTHO05D003483 2.8e-13 82.0 63 68.3
SHI17005 Sapria himalayana HOM05D001734 ORTHO05D003483 6.3e-13 80.9 201 32.8
TAR629G2960 Trochodendron aralioides HOM05D001734 ORTHO05D003483 6.9e-12 77.4 120 36.7
Gohir.A09G171650 Gossypium hirsutum HOM05D001734 ORTHO05D003483 6.5e-10 70.9 78 50.0
SHI17004 Sapria himalayana HOM05D001734 ORTHO05D020992 9.4e-09 67.0 44 65.9
SHI17006 Sapria himalayana HOM05D001734 ORTHO05D020518 9.4e-09 67.0 138 34.8
Lsat_1_v5_gn_4_160500 Lactuca sativa HOM05D005948 ORTHO05D007689 1.4e-07 63.2 42 66.7
Hund02744 Selenicereus undatus HOM05D001734 ORTHO05D003483 3.9e-07 61.6 38 68.4


User provided reference genes

Program Settings