Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 3.5e-74 282.0 190 100.0
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 5.2e-62 241.5 198 89.4
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 1.2e-61 240.4 183 89.1
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 5.4e-59 231.5 149 85.9
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 9.3e-59 230.7 198 78.3
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 9.3e-59 230.7 154 89.0
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 1.2e-58 230.3 153 86.9
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 2.1e-58 229.6 175 84.6
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 3.5e-58 228.8 146 86.3
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 3.3e-56 222.2 150 84.0
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 3.3e-56 222.2 150 84.0
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 5.6e-56 221.5 167 90.4
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 5.6e-56 221.5 167 90.4
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 9.6e-56 220.7 199 70.9
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 9.6e-56 220.7 163 79.8
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 1.3e-55 220.3 198 78.8
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 1.3e-55 220.3 150 90.0
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 2.1e-55 219.5 197 80.2
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 6.2e-55 218.0 200 80.0
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 6.2e-55 218.0 193 76.7
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 1.1e-54 217.2 177 83.1
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 1.4e-54 216.9 199 70.4
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 1.8e-54 216.5 198 75.8
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 2.4e-54 216.1 179 84.4
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 4.0e-54 215.3 195 80.0
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 5.3e-54 214.9 151 90.1
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 5.3e-54 214.9 192 78.6
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 6.9e-54 214.5 175 85.7
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 9.0e-54 214.2 151 84.8
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 2.6e-53 212.6 150 80.7
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.6e-53 212.6 169 78.7
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 2.6e-53 212.6 177 75.1
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 3.4e-53 212.2 198 79.8
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 4.4e-53 211.8 171 75.4
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 4.4e-53 211.8 171 75.4
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 5.8e-53 211.5 197 81.2
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 7.6e-53 211.1 178 82.0
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 7.6e-53 211.1 152 80.3
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 9.9e-53 210.7 199 74.9
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 9.9e-53 210.7 188 72.9
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 9.9e-53 210.7 198 80.8
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.3e-52 210.3 195 80.5
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 1.3e-52 210.3 198 77.3
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 1.7e-52 209.9 173 76.3
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.2e-52 209.5 158 82.3
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 3.8e-52 208.8 175 77.1
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 8.4e-52 207.6 149 85.2
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 8.4e-52 207.6 203 74.4
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 8.4e-52 207.6 171 74.3
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 8.4e-52 207.6 144 88.2
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 8.4e-52 207.6 144 88.2
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 8.4e-52 207.6 152 80.9
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 8.4e-52 207.6 152 80.9
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 8.4e-52 207.6 152 80.3
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 1.4e-51 206.8 160 83.1
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 1.4e-51 206.8 151 82.1
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 1.9e-51 206.5 152 73.7
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 2.4e-51 206.1 175 80.6
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.4e-51 206.1 198 80.3
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 3.2e-51 205.7 130 81.5
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 3.2e-51 205.7 168 82.7
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 3.2e-51 205.7 149 84.6
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 4.2e-51 205.3 198 80.3
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 4.2e-51 205.3 146 85.6
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 4.2e-51 205.3 153 82.4
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 4.2e-51 205.3 150 82.7
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 5.4e-51 204.9 172 77.9
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 5.4e-51 204.9 191 69.1
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 5.4e-51 204.9 179 72.6
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 7.1e-51 204.5 160 80.6
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 7.1e-51 204.5 152 78.3
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 9.3e-51 204.1 196 81.1
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 9.3e-51 204.1 171 83.0
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 1.2e-50 203.8 181 79.0
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 1.2e-50 203.8 169 74.0
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 1.2e-50 203.8 144 85.4
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 1.6e-50 203.4 198 79.8
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 2.1e-50 203.0 177 73.4
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 2.1e-50 203.0 191 71.7
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 2.7e-50 202.6 169 79.3
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 3.5e-50 202.2 155 79.4
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 3.5e-50 202.2 197 68.5
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 4.6e-50 201.8 182 74.2
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 4.6e-50 201.8 206 74.8
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 6.0e-50 201.4 171 74.9
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 6.0e-50 201.4 171 74.9
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 6.0e-50 201.4 199 79.9
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 6.0e-50 201.4 152 74.3
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 6.0e-50 201.4 151 84.1
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 6.0e-50 201.4 151 85.4
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 7.9e-50 201.1 153 81.7
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 7.9e-50 201.1 153 81.7
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 7.9e-50 201.1 152 84.9
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 1.3e-49 200.3 177 73.4
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 1.3e-49 200.3 171 74.3
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.7e-49 199.9 145 80.7
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 2.3e-49 199.5 148 84.5
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 3.0e-49 199.1 176 77.3
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 3.0e-49 199.1 150 77.3
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.9e-49 198.7 153 81.0
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 3.9e-49 198.7 189 75.7
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 6.6e-49 198.0 145 85.5
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 6.6e-49 198.0 194 76.8
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 6.6e-49 198.0 143 87.4
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 8.7e-49 197.6 154 83.1
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 8.7e-49 197.6 141 80.9
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.1e-48 197.2 142 87.3
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 1.1e-48 197.2 146 82.9
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.1e-48 197.2 178 76.4
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 1.5e-48 196.8 155 81.9
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 1.9e-48 196.4 150 75.3
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 2.5e-48 196.1 182 64.3
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 4.3e-48 195.3 202 77.7
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.6e-47 193.4 202 78.7
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 1.6e-47 193.4 191 67.0
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 2.1e-47 193.0 170 70.6
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 2.1e-47 193.0 154 77.9
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 2.8e-47 192.6 149 75.2
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 2.8e-47 192.6 161 77.6
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 3.6e-47 192.2 151 80.8
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 6.2e-47 191.4 172 73.8
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 6.2e-47 191.4 141 85.8
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 6.2e-47 191.4 141 85.8
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 1.4e-46 190.3 152 72.4
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 1.4e-46 190.3 172 69.2
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 1.8e-46 189.9 154 77.3
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 1.8e-46 189.9 154 77.3
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 1.8e-46 189.9 154 77.3
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 2.4e-46 189.5 140 85.0
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 2.4e-46 189.5 234 66.7
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 3.1e-46 189.1 171 67.3
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 3.1e-46 189.1 158 70.3
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 5.3e-46 188.3 160 74.4
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.5e-45 186.8 168 78.0
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 3.4e-45 185.7 152 76.3
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 1.7e-44 183.3 108 77.8
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 1.7e-44 183.3 153 76.5
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 4.9e-44 181.8 91 93.4
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 4.9e-44 181.8 151 74.2
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 4.9e-44 181.8 87 98.9
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 6.4e-44 181.4 148 79.7
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 1.4e-43 180.3 150 72.0
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 5.5e-43 178.3 93 90.3
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 5.5e-43 178.3 148 77.7
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 8.7e-41 171.0 155 73.5
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 8.7e-41 171.0 89 89.9
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.9e-40 169.9 97 80.4
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 3.3e-40 169.1 150 72.0
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 3.4e-37 159.1 81 88.9
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 7.1e-35 151.4 151 68.2
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 2.7e-34 149.4 130 62.3
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 2.7e-34 149.4 94 70.2
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 6.9e-30 134.8 77 79.2
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 1.2e-29 134.0 103 68.0
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 1.2e-26 124.0 76 71.1
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 1.2e-26 124.0 66 90.9
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 6.1e-26 121.7 116 75.9
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 1.1e-24 117.5 96 61.5
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 1.0e-20 104.4 114 45.6
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 1.3e-20 104.0 132 53.0
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 6.1e-18 95.1 49 83.7
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 1.1e-16 90.9 105 50.5
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 1.7e-15 87.0 192 43.8
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 6.3e-15 85.1 49 83.7
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 6.3e-15 85.1 49 83.7
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 2.4e-14 83.2 49 81.6
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 5.3e-14 82.0 49 81.6
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 5.3e-14 82.0 49 81.6
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 5.3e-14 82.0 49 81.6
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 2.2e-12 76.6 45 82.2
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 2.7e-10 69.7 39 82.1
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 1.7e-07 60.5 35 74.3


User provided reference genes

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