Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 1.6e-183 646.0 321 100.0
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 3.1e-147 525.4 302 86.1
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 6.4e-129 464.5 289 81.3
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 1.8e-126 456.4 301 77.1
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 2.1e-124 449.5 301 74.4
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 1.0e-118 430.6 301 74.4
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 1.0e-118 430.6 301 73.4
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 5.1e-118 428.3 301 71.8
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 2.2e-113 412.9 301 70.4
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 1.4e-112 410.2 301 70.8
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 2.6e-106 389.4 343 62.4
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 7.9e-103 377.9 303 64.4
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 3.0e-102 375.9 303 63.4
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 5.1e-102 375.2 305 63.0
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.0e-101 373.2 304 65.5
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 2.5e-101 372.9 303 62.0
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 3.3e-101 372.5 303 65.7
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 7.4e-101 371.3 304 65.1
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 9.7e-101 370.9 305 65.6
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 6.3e-100 368.2 304 64.5
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 5.3e-99 365.2 303 64.4
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 1.5e-98 363.6 303 64.0
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.4e-98 362.5 304 64.1
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 7.7e-98 361.3 303 64.4
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.7e-97 360.1 306 61.8
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.7e-97 360.1 306 61.8
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 1.1e-96 357.5 250 69.6
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 2.5e-96 356.3 215 84.2
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 3.2e-96 355.9 305 62.0
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 2.1e-95 353.2 303 63.0
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 6.1e-95 351.7 302 62.3
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 3.9e-94 349.0 288 63.9
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 5.1e-94 348.6 304 60.2
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 1.1e-93 347.4 303 60.4
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 1.1e-93 347.4 307 61.6
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 1.5e-93 347.1 292 64.7
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 4.4e-93 345.5 331 55.9
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 5.7e-93 345.1 304 59.9
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 7.4e-93 344.7 302 59.3
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.3e-92 344.0 230 73.0
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 2.8e-92 342.8 245 68.2
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 2.8e-92 342.8 245 68.2
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 6.3e-92 341.7 307 56.7
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 3.1e-91 339.3 307 59.3
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 4.1e-91 339.0 303 57.8
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 9.1e-91 337.8 302 57.6
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 3.5e-90 335.9 306 57.2
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 4.5e-90 335.5 307 58.0
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 5.9e-90 335.1 296 58.8
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 7.7e-90 334.7 271 64.6
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 1.0e-89 334.3 247 67.6
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.3e-89 334.0 306 56.9
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 1.7e-89 333.6 299 59.2
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 1.7e-89 333.6 306 59.5
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 3.8e-89 332.4 303 57.4
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 8.5e-89 331.3 297 58.2
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 8.5e-89 331.3 299 59.2
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 1.1e-88 330.9 357 53.2
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 1.4e-88 330.5 304 58.2
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 3.2e-88 329.3 304 57.9
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 3.2e-88 329.3 304 57.9
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.6e-87 327.0 301 59.8
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 2.1e-87 326.6 258 64.0
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 2.7e-87 326.2 300 56.3
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 2.7e-87 326.2 230 67.0
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 1.0e-86 324.3 304 55.3
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 1.0e-86 324.3 246 65.0
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.4e-86 323.9 289 60.2
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 1.8e-86 323.6 302 56.0
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 1.8e-86 323.6 304 57.9
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.8e-86 323.6 275 63.6
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 3.0e-86 322.8 304 57.6
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 3.0e-86 322.8 304 57.9
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 5.2e-86 322.0 245 63.3
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 5.2e-86 322.0 299 57.9
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 6.7e-86 321.6 304 57.6
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 6.7e-86 321.6 304 57.6
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 1.5e-85 320.5 304 56.2
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 2.0e-85 320.1 305 53.8
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 3.3e-85 319.3 288 57.3
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 3.3e-85 319.3 258 63.6
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 4.4e-85 318.9 302 57.3
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 7.4e-85 318.2 303 57.4
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 9.7e-85 317.8 304 57.2
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 1.1e-83 314.3 304 58.6
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 1.8e-83 313.5 303 54.8
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 2.4e-83 313.2 311 54.7
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 2.4e-83 313.2 304 54.6
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 3.1e-83 312.8 234 67.1
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 4.1e-83 312.4 304 54.6
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.6e-82 310.5 256 62.5
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 4.5e-82 308.9 298 53.7
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 7.7e-82 308.1 273 60.1
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 3.8e-81 305.8 314 54.8
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 5.0e-81 305.4 300 53.7
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 1.1e-80 304.3 227 62.1
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 6.8e-78 295.0 206 68.0
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 4.8e-76 288.9 288 53.8
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 5.3e-75 285.4 238 62.6
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 7.7e-74 281.6 301 49.5
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 2.2e-73 280.0 206 64.6
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 2.9e-73 279.6 215 63.3
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.5e-72 277.3 238 60.5
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.4e-70 270.8 310 50.3
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 4.4e-69 265.8 238 59.2
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 2.8e-68 263.1 290 50.7
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 1.8e-67 260.4 270 54.4
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 2.0e-66 256.9 349 46.7
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 1.2e-63 247.7 218 63.3
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 2.8e-63 246.5 263 50.2
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 9.5e-56 221.5 238 55.5
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 1.6e-55 220.7 293 44.7
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 6.1e-55 218.8 176 63.6
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.0e-54 218.0 188 60.1
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.6e-53 213.4 219 55.3
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 7.5e-53 211.8 200 60.0
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 9.8e-53 211.5 189 54.0
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 4.9e-52 209.1 218 56.4
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 5.4e-51 205.7 238 49.6
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 2.0e-50 203.8 305 38.4
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 3.9e-49 199.5 150 65.3
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 2.5e-48 196.8 243 44.9
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 3.3e-48 196.4 247 48.6
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 1.8e-46 190.7 282 44.0
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 1.3e-44 184.5 131 67.2
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 6.0e-42 175.6 142 61.3
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 3.9e-41 172.9 309 37.5
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.1e-40 171.4 110 75.5
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 5.2e-38 162.5 216 46.8
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 5.8e-37 159.1 250 41.6
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 9.9e-37 158.3 114 63.2
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 1.1e-35 154.8 170 50.0
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.1e-32 144.8 149 55.0
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 4.9e-28 129.4 301 31.6
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.3e-25 121.3 84 71.4
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 2.9e-20 103.6 183 37.7
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 6.0e-18 95.9 220 29.5
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 6.9e-14 82.4 180 29.4
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 1.1e-06 58.5 45 64.4


User provided reference genes

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