Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 8.9e-243 843.2 431 100.0
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 1.9e-216 755.7 436 89.4
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 5.5e-216 754.2 440 89.8
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 1.9e-213 745.7 437 88.6
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 2.5e-205 718.8 461 83.7
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 2.8e-196 688.7 432 83.6
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 3.8e-193 678.3 433 81.5
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 5.0e-193 677.9 433 81.5
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 2.7e-191 672.2 445 80.7
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 4.7e-191 671.4 445 80.4
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 8.8e-190 667.2 447 79.9
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 9.1e-187 657.1 433 79.9
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 4.2e-184 648.3 431 78.9
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 8.0e-183 644.0 439 76.3
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 3.2e-176 622.1 445 74.2
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 3.6e-175 618.6 456 73.0
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 4.7e-175 618.2 445 73.5
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.0e-174 617.1 455 73.0
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 1.4e-174 616.7 445 73.3
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 4.0e-174 615.1 456 72.6
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 2.6e-173 612.5 454 72.2
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 7.5e-173 610.9 453 72.6
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 6.3e-172 607.8 452 72.8
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.8e-171 606.3 452 72.3
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 1.8e-171 606.3 454 71.8
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 3.1e-171 605.5 446 72.9
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 9.1e-171 604.0 452 73.2
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 6.5e-169 597.8 450 70.7
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 6.5e-169 597.8 458 69.9
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.9e-168 596.3 447 70.9
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 3.2e-168 595.5 452 70.4
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 1.2e-167 593.6 449 70.2
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 1.0e-166 590.5 451 69.8
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.8e-166 589.7 446 70.6
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 2.3e-166 589.3 440 71.4
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 5.2e-166 588.2 450 71.1
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 4.4e-165 585.1 453 70.6
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.7e-164 583.2 446 70.0
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.8e-164 582.4 454 69.4
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 8.3e-164 580.9 454 70.0
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 1.1e-163 580.5 445 69.4
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 7.0e-163 577.8 454 69.6
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 7.0e-163 577.8 447 69.8
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 1.2e-162 577.0 446 69.5
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 2.7e-162 575.9 443 68.2
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 2.7e-162 575.9 447 69.1
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 1.7e-161 573.2 446 69.1
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.3e-161 572.8 451 69.0
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.9e-161 572.4 456 68.4
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 6.6e-161 571.2 439 70.4
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 8.6e-161 570.9 442 69.7
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 1.1e-160 570.5 458 66.8
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 3.3e-160 568.9 443 66.8
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 5.5e-160 568.2 439 68.6
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 7.2e-160 567.8 463 67.0
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 9.5e-160 567.4 450 69.6
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 1.6e-159 566.6 443 66.6
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 2.8e-159 565.8 450 69.6
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 3.6e-159 565.5 447 67.6
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 6.1e-159 564.7 443 67.0
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 6.1e-159 564.7 460 68.5
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 1.4e-158 563.5 453 68.4
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 1.4e-158 563.5 443 68.8
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 3.0e-158 562.4 448 68.8
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 1.2e-157 560.5 419 71.6
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 3.4e-157 558.9 393 72.8
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 7.5e-157 557.8 440 68.4
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 7.5e-157 557.8 430 69.3
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 1.7e-156 556.6 443 66.4
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.7e-156 556.6 452 67.5
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.7e-156 556.6 452 67.9
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 1.7e-156 556.6 453 67.3
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 1.4e-155 553.5 452 66.2
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 1.4e-155 553.5 444 65.8
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 1.8e-155 553.1 424 70.8
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 4.1e-155 552.0 443 65.5
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 7.0e-155 551.2 453 66.0
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 2.7e-154 549.3 453 68.0
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 2.7e-154 549.3 408 70.8
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 5.9e-154 548.1 445 65.4
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 1.7e-153 546.6 445 65.2
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 3.9e-153 545.4 496 62.3
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 6.6e-153 544.7 435 65.5
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 8.6e-153 544.3 428 68.9
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 1.5e-152 543.5 435 65.3
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 3.3e-152 542.3 443 65.2
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 4.3e-152 542.0 435 65.3
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 1.6e-151 540.0 435 64.4
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.6e-151 540.0 453 66.4
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 3.6e-151 538.9 456 65.8
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 2.3e-150 536.2 443 63.9
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 4.4e-149 531.9 463 60.9
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 3.7e-148 528.9 432 66.9
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 3.7e-148 528.9 450 64.2
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 6.4e-148 528.1 469 61.6
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 8.3e-148 527.7 440 63.4
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 3.2e-147 525.8 450 63.1
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 9.2e-147 524.2 414 69.1
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 1.6e-146 523.5 447 63.8
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 4.6e-146 521.9 453 64.7
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 3.9e-145 518.8 451 61.9
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 1.9e-144 516.5 426 66.7
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 2.5e-144 516.2 450 61.8
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 3.1e-142 509.2 454 62.8
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 1.4e-139 500.4 444 61.7
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.6e-138 496.9 441 63.9
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 2.7e-138 496.1 457 61.9
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.7e-137 493.4 455 62.2
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 2.8e-135 486.1 453 60.3
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 2.8e-135 486.1 444 60.6
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 1.7e-132 476.9 446 61.7
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 6.4e-132 474.9 384 64.6
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 1.9e-131 473.4 365 69.0
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 7.1e-131 471.5 507 54.8
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.7e-129 466.8 417 61.6
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 9.5e-128 461.1 405 63.0
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 4.0e-126 455.7 449 60.8
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 1.2e-125 454.1 423 61.2
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 1.7e-121 440.3 409 60.1
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 1.9e-115 420.2 394 59.1
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 1.2e-114 417.5 469 51.6
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 6.6e-113 411.8 334 66.5
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 5.6e-112 408.7 482 53.7
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 1.3e-108 397.5 453 53.9
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 3.8e-108 396.0 334 62.6
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 2.5e-104 383.3 478 48.3
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 6.2e-103 378.6 480 46.9
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 1.2e-101 374.4 364 57.1
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 5.8e-101 372.1 486 44.2
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 1.3e-100 370.9 435 51.5
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 9.6e-96 354.8 458 49.1
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 5.8e-93 345.5 243 70.4
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 3.8e-84 316.2 335 53.4
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 1.6e-82 310.8 352 54.8
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 2.0e-80 303.9 451 41.5
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 8.5e-76 288.5 372 44.4
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 1.8e-70 270.8 422 44.3
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.5e-69 267.7 516 34.3
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 6.3e-63 245.7 251 57.0
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 1.4e-57 228.0 246 56.5
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 1.3e-55 221.5 381 38.1
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 3.7e-55 219.9 173 66.5
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 7.2e-51 205.7 176 60.2
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 1.4e-49 201.4 178 60.7
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 4.0e-49 199.9 128 77.3
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 5.7e-48 196.1 172 59.9
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 3.1e-46 190.3 378 36.2
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 5.5e-43 179.5 264 42.0
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.2e-40 171.8 176 55.1
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 6.4e-31 139.4 114 59.6
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 6.0e-29 132.9 354 31.9
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 2.5e-27 127.5 138 48.6
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 4.0e-25 120.2 90 64.4
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 5.2e-25 119.8 143 53.8
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 8.9e-25 119.0 153 51.0
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 8.9e-25 119.0 134 53.7
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 1.1e-22 112.1 172 43.0
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 7.1e-22 109.4 133 54.9
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 3.6e-18 97.1 57 73.7
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 4.7e-18 96.7 99 50.5
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 8.1e-18 95.9 161 44.1
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 6.4e-15 86.3 79 64.6
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 1.6e-13 81.6 300 25.0
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 2.1e-13 81.3 87 54.0
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 2.7e-13 80.9 199 35.2
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 4.3e-11 73.6 109 39.4
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 2.1e-10 71.2 122 46.7
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 1.8e-09 68.2 43 79.1
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 5.8e-08 63.2 42 76.2
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 4.9e-07 60.1 40 75.0
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 6.4e-07 59.7 42 66.7
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.1e-06 58.9 32 87.5
SHI33154 Sapria himalayana HOM05D004146 ORTHO05D004843 3.2e-06 57.4 50 58.0


User provided reference genes

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