Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G36125 Trifolium pratense HOM05D006560 ORTHO05D008164 1.0e-63 246.5 120 100.0
TPR.G15397 Trifolium pratense HOM05D006560 ORTHO05D008164 1.3e-58 229.6 114 98.2
Medtr5g076180 Medicago truncatula HOM05D006560 ORTHO05D008164 4.1e-52 208.0 119 86.6
Ca_05740_v3 Cicer arietinum L. HOM05D006560 ORTHO05D008164 1.1e-46 189.9 114 82.5
Psat2g048560 Pisum sativum HOM05D006560 ORTHO05D008164 1.1e-46 189.9 114 82.5
Glyma.02G239200 Glycine max HOM05D006560 ORTHO05D008164 4.3e-46 188.0 117 77.8
VMungo0647G2139 Vigna mungo HOM05D006560 ORTHO05D008164 1.3e-45 186.4 119 74.8
Glyma.14G208100 Glycine max HOM05D006560 ORTHO05D008164 2.2e-45 185.7 119 74.8
Lalb_Chr17g0345771 Lupinus albus HOM05D006560 ORTHO05D008164 2.8e-45 185.3 119 73.1
LjContig00141g0007295 Lotus japonicus HOM05D006560 ORTHO05D008164 6.3e-45 184.1 114 79.8
Phvul.008G242800 Phaseolus vulgaris HOM05D006560 ORTHO05D008164 3.4e-43 178.3 119 73.1
arahy.Tifrunner.gnm1.ann1.N6ISZX Arachis hypogaea HOM05D006560 ORTHO05D008164 1.4e-41 172.9 119 71.4
arahy.Tifrunner.gnm1.ann1.RNL3QM Arachis hypogaea HOM05D006560 ORTHO05D008164 9.4e-41 170.2 119 69.7
QL02p055474 Quercus lobata HOM05D006560 ORTHO05D008164 5.7e-38 161.0 120 65.0
QL02p056517 Quercus lobata HOM05D006560 ORTHO05D008164 5.7e-38 161.0 120 65.0
Ciclev10012792m.g Citrus clementina HOM05D006560 ORTHO05D008164 2.4e-36 155.6 120 65.0
Cfa008016 Carpinus fangiana HOM05D006560 ORTHO05D008164 2.6e-35 152.1 120 64.2
Haze_14043 Corylus avellana HOM05D006560 ORTHO05D008164 3.5e-35 151.8 120 62.5
Nitab4.5_0000108g0060 Nicotiana tabacum HOM05D006560 ORTHO05D008164 7.7e-35 150.6 125 58.4
PSO063G7212 Papaver somniferum HOM05D006560 ORTHO05D008164 1.0e-34 150.2 121 62.0
Nitab4.5_0003580g0010 Nicotiana tabacum HOM05D006560 ORTHO05D008164 1.7e-34 149.4 118 60.2
TWI77G0885 Tripterygium wilfordii HOM05D006560 ORTHO05D008164 1.7e-34 149.4 120 60.8
Atru.chr1.2184 Acer truncatum HOM05D006560 ORTHO05D008164 2.2e-34 149.1 121 61.2
GSVIVG01033201001 Vitis vinifera HOM05D006560 ORTHO05D008164 2.2e-34 149.1 121 60.3
PSO782G5584 Papaver somniferum HOM05D006560 ORTHO05D008164 3.8e-34 148.3 121 61.2
Actinidia22879 Actinidia chinensis HOM05D006560 ORTHO05D008164 6.5e-34 147.5 121 59.5
Eucgr.B03794 Eucalyptus grandis HOM05D006560 ORTHO05D008164 1.4e-33 146.4 121 61.2
TAR629G1839 Trochodendron aralioides HOM05D006560 ORTHO05D008164 1.9e-33 146.0 121 61.2
Cc07_g12560 Coffea canephora HOM05D006560 ORTHO05D008164 2.5e-33 145.6 121 62.0
Manes.01G126500 Manihot esculenta HOM05D006560 ORTHO05D008164 3.2e-33 145.2 120 60.0
Aqoxy3G04298 Aquilegia oxysepala HOM05D006560 ORTHO05D008164 9.4e-33 143.7 121 56.2
Hma1.2p1_0085F.1_g043920 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 1.2e-32 143.3 121 57.9
Nn3g18627 Nelumbo nucifera HOM05D006560 ORTHO05D008164 1.2e-32 143.3 119 59.7
RcHm_v2.0_Chr7g0242051 Rosa chinensis HOM05D006560 ORTHO05D008164 1.2e-32 143.3 121 57.9
FAN08G2099 Fragaria x ananassa HOM05D006560 ORTHO05D008164 2.1e-32 142.5 122 59.8
Peaxi162Scf00344g01815 Petunia axillaris HOM05D006560 ORTHO05D008164 2.1e-32 142.5 120 56.7
Prupe.8G267600 Prunus persica HOM05D006560 ORTHO05D008164 2.1e-32 142.5 120 60.0
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 3.6e-32 141.7 121 59.5
CiPaw.04G006800 Carya illinoinensis HOM05D006560 ORTHO05D008164 4.7e-32 141.4 115 60.0
FvH4_5g39750 Fragaria vesca HOM05D006560 ORTHO05D008164 6.1e-32 141.0 121 57.9
Hma1.2p1_0085F.1_g043960 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 6.1e-32 141.0 120 57.5
MD09G1187400 Malus domestica HOM05D006560 ORTHO05D008164 8.0e-32 140.6 121 60.3
Solyc02g081520.3 Solanum lycopersicum HOM05D006560 ORTHO05D008164 8.0e-32 140.6 120 56.7
CANSAT64G2566 Cannabis sativa HOM05D006560 ORTHO05D008164 1.4e-31 139.8 121 56.2
SalBow5G2177 Salvia bowleyana HOM05D006560 ORTHO05D008164 2.3e-31 139.0 122 59.0
Thecc.04G055900 Theobroma cacao HOM05D006560 ORTHO05D008164 3.9e-31 138.3 116 56.0
ECA246G0244 Erigeron canadensis HOM05D006560 ORTHO05D008164 5.2e-31 137.9 116 58.6
Hma1.2p1_0085F.1_g043925 Hydrangea macrophylla HOM05D006560 ORTHO05D008164 5.2e-31 137.9 100 63.0
HanXRQChr16g0532681 Helianthus annuus HOM05D006560 ORTHO05D008164 6.7e-31 137.5 117 59.8
Hund12951 Selenicereus undatus HOM05D006560 ORTHO05D008164 1.1e-30 136.7 120 54.2
DCAR_014134 Daucus carota HOM05D006560 ORTHO05D008164 1.5e-30 136.3 118 58.5
ClCG05G011330 Citrullus lanatus HOM05D006560 ORTHO05D008164 2.0e-30 136.0 120 55.8
PGSC0003DMG400017739 Solanum tuberosum HOM05D006560 ORTHO05D008164 3.3e-30 135.2 119 54.6
Gohir.A12G053000 Gossypium hirsutum HOM05D006560 ORTHO05D008164 4.4e-30 134.8 116 55.2
Gorai.008G054800 Gossypium raimondii HOM05D006560 ORTHO05D008164 4.4e-30 134.8 116 55.2
Sp3g01710 Schrenkiella parvula HOM05D006560 ORTHO05D008164 5.7e-30 134.4 122 51.6
CAN.G809.82 Capsicum annuum HOM05D006560 ORTHO05D008164 7.4e-30 134.0 121 52.9
COL.COLO4_13435 Corchorus olitorius HOM05D006560 ORTHO05D008164 7.4e-30 134.0 116 55.2
Gohir.D12G051500 Gossypium hirsutum HOM05D006560 ORTHO05D008164 9.7e-30 133.7 116 55.2
Duzib138G1900 Durio zibethinus HOM05D006560 ORTHO05D008164 1.3e-29 133.3 116 53.4
Migut.K01188 Erythranthe guttata HOM05D006560 ORTHO05D008164 2.8e-29 132.1 119 54.6
CARHR076680 Cardamine hirsuta HOM05D006560 ORTHO05D008164 3.7e-29 131.7 119 52.1
Lsat_1_v5_gn_3_69681 Lactuca sativa HOM05D006560 ORTHO05D008164 3.7e-29 131.7 117 54.7
vmacro20436 Vaccinium macrocarpon HOM05D006560 ORTHO05D008164 3.7e-29 131.7 119 56.3
CsaV3_3G021130 Cucumis sativus L. HOM05D006560 ORTHO05D008164 8.2e-29 130.6 120 55.0
Sabra15G0156900 Salix brachista HOM05D006560 ORTHO05D008164 8.2e-29 130.6 120 59.2
MSTRG.3663 Avicennia marina HOM05D006560 ORTHO05D008164 1.1e-28 130.2 121 57.0
AUR62038458 Chenopodium quinoa HOM05D006560 ORTHO05D008164 1.1e-28 130.2 121 54.5
Potri.015G148300 Populus trichocarpa HOM05D006560 ORTHO05D008164 1.1e-28 130.2 121 58.7
AL3G12070 Arabidopsis lyrata HOM05D006560 ORTHO05D008164 1.4e-28 129.8 119 49.6
Sabra16G0321300 Salix brachista HOM05D006560 ORTHO05D008164 1.8e-28 129.4 120 58.3
BraA06t23296Z Brassica rapa HOM05D006560 ORTHO05D008164 3.1e-28 128.6 122 49.2
CSS0021055 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D000105 3.1e-28 128.6 91 67.0
Sabra16G0322200 Salix brachista HOM05D006560 ORTHO05D008164 3.1e-28 128.6 120 59.2
PGR102G0946 Punica granatum HOM05D006560 ORTHO05D008164 4.1e-28 128.3 117 55.6
Sed0010007 Sechium edule HOM05D006560 ORTHO05D008164 5.3e-28 127.9 115 55.7
BcaC05g30567 Brassica carinata HOM05D006560 ORTHO05D008164 7.0e-28 127.5 118 50.0
A05p44410 Brassica napus HOM05D006560 ORTHO05D008164 9.1e-28 127.1 122 48.4
MELO3C020249.2 Cucumis melo HOM05D006560 ORTHO05D008164 9.1e-28 127.1 120 55.8
AUR62014236 Chenopodium quinoa HOM05D006560 ORTHO05D008164 2.0e-27 125.9 118 54.2
Carub.0003s0178 Capsella rubella HOM05D006560 ORTHO05D008164 2.6e-27 125.6 123 47.2
C09p75830 Brassica napus HOM05D006560 ORTHO05D008164 4.5e-27 124.8 122 48.4
BolC5t35073H Brassica oleracea HOM05D006560 ORTHO05D008164 4.5e-27 124.8 122 48.4
Thhalv10020468m.g Eutrema salsugineum HOM05D006560 ORTHO05D008164 5.9e-27 124.4 122 49.2
BcaC05g30516 Brassica carinata HOM05D006560 ORTHO05D008164 7.7e-27 124.0 122 47.5
AT3G02680 Arabidopsis thaliana HOM05D006560 ORTHO05D008164 1.0e-26 123.6 124 46.8
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 1.3e-26 123.2 117 53.0
EL10Ac6g14054 Beta vulgaris HOM05D006560 ORTHO05D008164 2.9e-26 122.1 120 50.0
Ah.14g086100 Amaranthus hybridus HOM05D006560 ORTHO05D008164 1.1e-25 120.2 120 49.2
Aa31LG5G13150 Aethionema arabicum HOM05D006560 ORTHO05D008164 4.2e-25 118.2 133 47.4
Dinv28275 Davidia involucrata HOM05D006560 ORTHO05D008164 2.7e-24 115.5 84 64.3
Migut.L00937 Erythranthe guttata HOM05D006560 ORTHO05D008164 1.0e-23 113.6 91 60.4
SHI09016 Sapria himalayana HOM05D006560 ORTHO05D008164 1.8e-23 112.8 92 55.4
Oeu060825.3 Olea europaea HOM05D006560 ORTHO05D008164 2.3e-23 112.5 81 63.0
Lj4A249G52 Lonicera japonica HOM05D006560 ORTHO05D008164 9.7e-22 107.1 84 58.3
Sc09g0004640 Simmondsia chinensis HOM05D006560 ORTHO05D008164 1.8e-20 102.8 83 55.4
unitig_748.g7016 Utricularia gibba HOM05D006560 ORTHO05D008164 9.1e-20 100.5 102 51.0
ATR0618G008 Amborella trichopoda HOM05D006560 ORTHO05D008164 2.0e-19 99.4 121 42.1
HPP92_015158 Vanilla planifolia HOM05D006560 ORTHO05D008164 2.5e-17 92.4 121 40.5
Zm00001eb221260 Zea mays HOM05D006560 ORTHO05D008164 1.0e-15 87.0 121 39.7
Os10g0487300 Oryza sativa ssp. japonica HOM05D006560 ORTHO05D008164 3.0e-15 85.5 121 39.7
MBI03_g13822_MAGBIO Magnolia biondii HOM05D006560 ORTHO05D008164 6.8e-15 84.3 81 51.9
SEGI_37812 Sequoiadendron giganteum HOM05D006560 ORTHO05D008164 1.7e-13 79.7 121 36.4
Migut.L00945 Erythranthe guttata HOM05D006560 ORTHO05D008164 6.3e-13 77.8 53 66.0
SMO169G0207 Selaginella moellendorffii HOM05D006560 ORTHO05D008164 2.4e-12 75.9 114 41.2
Pp3c4_14090 Physcomitrium patens HOM05D006560 ORTHO05D008164 5.5e-09 64.7 98 34.7


User provided reference genes

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