Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G35191 Trifolium pratense HOM05D003635 ORTHO05D004283 7.9e-106 387.1 194 100.0
Psat6g237600 Pisum sativum HOM05D003635 ORTHO05D004283 4.3e-104 381.3 194 97.9
Ca_11305_v3 Cicer arietinum L. HOM05D003635 ORTHO05D004283 9.6e-104 380.2 194 96.9
Medtr1g115525 Medicago truncatula HOM05D003635 ORTHO05D004283 1.1e-102 376.7 194 95.9
Lj5g0001158 Lotus japonicus HOM05D003635 ORTHO05D004283 3.1e-102 375.2 194 96.4
arahy.Tifrunner.gnm1.ann1.4JT818 Arachis hypogaea HOM05D003635 ORTHO05D004283 1.5e-101 372.9 194 94.3
arahy.Tifrunner.gnm1.ann1.T81D7J Arachis hypogaea HOM05D003635 ORTHO05D004283 1.5e-101 372.9 194 94.3
Glyma.20G240500 Glycine max HOM05D003635 ORTHO05D004283 7.6e-101 370.5 194 93.3
Glyma.10G291300 Glycine max HOM05D003635 ORTHO05D004283 1.7e-100 369.4 194 92.8
Lalb_Chr06g0164191 Lupinus albus HOM05D003635 ORTHO05D004283 2.2e-100 369.0 194 93.3
Lalb_Chr02g0143971 Lupinus albus HOM05D003635 ORTHO05D004283 6.5e-100 367.5 194 92.8
Phvul.007G009600 Phaseolus vulgaris HOM05D003635 ORTHO05D004283 6.5e-100 367.5 194 93.3
VMungo0720G0614 Vigna mungo HOM05D003635 ORTHO05D004283 1.9e-99 365.9 194 92.8
CANSAT56G1536 Cannabis sativa HOM05D003635 ORTHO05D004283 3.2e-99 365.2 194 90.7
Cpa.g.sc1.324 Carica papaya HOM05D003635 ORTHO05D004283 5.5e-99 364.4 194 91.8
Sabra08G0035000 Salix brachista HOM05D003635 ORTHO05D004283 5.5e-99 364.4 194 90.2
ClCG02G013500 Citrullus lanatus HOM05D003635 ORTHO05D004283 2.1e-98 362.5 194 89.2
MELO3C023823.2 Cucumis melo HOM05D003635 ORTHO05D004283 2.1e-98 362.5 194 89.2
CsaV3_5G006650 Cucumis sativus L. HOM05D003635 ORTHO05D004283 2.1e-98 362.5 194 89.2
Potri.008G048900 Populus trichocarpa HOM05D003635 ORTHO05D004283 2.7e-98 362.1 194 89.2
THA.LOC104824257 Tarenaya hassleriana HOM05D003635 ORTHO05D004283 2.7e-98 362.1 194 90.7
QL08p057820 Quercus lobata HOM05D003635 ORTHO05D004283 3.5e-98 361.7 194 89.7
Manes.07G109100 Manihot esculenta HOM05D003635 ORTHO05D004283 4.6e-98 361.3 194 89.7
PGSC0003DMG400030187 Solanum tuberosum HOM05D003635 ORTHO05D004283 4.6e-98 361.3 194 90.2
Actinidia26801 Actinidia chinensis HOM05D003635 ORTHO05D004283 6.1e-98 360.9 194 89.7
CSS0019699 Camellia sinensis var. sinensis HOM05D003635 ORTHO05D004283 6.1e-98 360.9 194 89.7
Sed0026990 Sechium edule HOM05D003635 ORTHO05D004283 6.1e-98 360.9 194 89.7
Solyc04g010260.3 Solanum lycopersicum HOM05D003635 ORTHO05D004283 6.1e-98 360.9 194 90.2
Sopen04g005450 Solanum pennellii HOM05D003635 ORTHO05D004283 6.1e-98 360.9 194 90.2
EL10Ac2g03470 Beta vulgaris HOM05D003635 ORTHO05D004283 7.9e-98 360.5 194 89.7
MD01G1119800 Malus domestica HOM05D003635 ORTHO05D004283 7.9e-98 360.5 194 88.1
MD07G1189000 Malus domestica HOM05D003635 ORTHO05D004283 7.9e-98 360.5 194 88.1
Rhsim09G0157900 Rhododendron simsii HOM05D003635 ORTHO05D004283 7.9e-98 360.5 194 89.2
Potri.010G212100 Populus trichocarpa HOM05D003635 ORTHO05D004283 1.0e-97 360.1 194 88.7
TWI63G0503 Tripterygium wilfordii HOM05D003635 ORTHO05D004283 1.0e-97 360.1 194 89.2
Ah.09g234270 Amaranthus hybridus HOM05D003635 ORTHO05D004283 1.3e-97 359.8 194 89.2
CiPaw.02G179700 Carya illinoinensis HOM05D003635 ORTHO05D004283 1.3e-97 359.8 194 89.7
Eucgr.J01165 Eucalyptus grandis HOM05D003635 ORTHO05D004283 1.3e-97 359.8 194 89.2
Hma1.2p1_3477F.1_g336300 Hydrangea macrophylla HOM05D003635 ORTHO05D004283 1.3e-97 359.8 194 90.7
Cfa001548 Carpinus fangiana HOM05D003635 ORTHO05D004283 1.8e-97 359.4 194 89.7
Manes.10G036500 Manihot esculenta HOM05D003635 ORTHO05D004283 1.8e-97 359.4 194 88.7
Prupe.2G226500 Prunus persica HOM05D003635 ORTHO05D004283 1.8e-97 359.4 194 88.1
Sp5g07240 Schrenkiella parvula HOM05D003635 ORTHO05D004283 1.8e-97 359.4 194 91.2
THA.LOC104810010 Tarenaya hassleriana HOM05D003635 ORTHO05D004283 1.8e-97 359.4 194 90.2
CiPaw.01G281100 Carya illinoinensis HOM05D003635 ORTHO05D004283 3.0e-97 358.6 194 89.2
Hund19994 Selenicereus undatus HOM05D003635 ORTHO05D004283 3.0e-97 358.6 194 88.7
BcaB02g07694 Brassica carinata HOM05D003635 ORTHO05D004283 3.9e-97 358.2 194 89.7
Lj8A91T61 Lonicera japonica HOM05D003635 ORTHO05D004283 3.9e-97 358.2 194 90.7
TAR369G0684 Trochodendron aralioides HOM05D003635 ORTHO05D004283 3.9e-97 358.2 193 90.7
AUR62022537 Chenopodium quinoa HOM05D003635 ORTHO05D004283 5.1e-97 357.8 194 88.7
DCAR_019162 Daucus carota HOM05D003635 ORTHO05D004283 5.1e-97 357.8 194 89.2
Gohir.A10G210700 Gossypium hirsutum HOM05D003635 ORTHO05D004283 5.1e-97 357.8 194 89.7
AT3G55200 Arabidopsis thaliana HOM05D003635 ORTHO05D004283 6.7e-97 357.5 194 90.2
AT3G55220 Arabidopsis thaliana HOM05D003635 ORTHO05D004283 6.7e-97 357.5 194 90.2
AUR62035965 Chenopodium quinoa HOM05D003635 ORTHO05D004283 6.7e-97 357.5 194 88.1
FAN19G1456 Fragaria x ananassa HOM05D003635 ORTHO05D004283 6.7e-97 357.5 194 88.1
FAN23G1337 Fragaria x ananassa HOM05D003635 ORTHO05D004283 6.7e-97 357.5 194 88.1
FAN23G3063 Fragaria x ananassa HOM05D003635 ORTHO05D004283 6.7e-97 357.5 194 88.1
FAN26G2866 Fragaria x ananassa HOM05D003635 ORTHO05D004283 6.7e-97 357.5 194 88.1
FAN28G1684 Fragaria x ananassa HOM05D003635 ORTHO05D004283 6.7e-97 357.5 194 88.1
Oeu016870.1 Olea europaea HOM05D003635 ORTHO05D004283 6.7e-97 357.5 194 88.1
Aa31LG10G9870 Aethionema arabicum HOM05D003635 ORTHO05D004283 8.7e-97 357.1 194 89.2
DCAR_015231 Daucus carota HOM05D003635 ORTHO05D004283 8.7e-97 357.1 194 88.7
Nitab4.5_0012497g0010 Nicotiana tabacum HOM05D003635 ORTHO05D004283 1.1e-96 356.7 194 88.1
RcHm_v2.0_Chr3g0492631 Rosa chinensis HOM05D003635 ORTHO05D004283 1.1e-96 356.7 194 87.6
BcaC09g48162 Brassica carinata HOM05D003635 ORTHO05D004283 1.9e-96 355.9 194 88.1
BolC1t05325H Brassica oleracea HOM05D003635 ORTHO05D004283 1.9e-96 355.9 194 88.1
BraA01t04192Z Brassica rapa HOM05D003635 ORTHO05D004283 1.9e-96 355.9 194 88.1
Dinv25952 Davidia involucrata HOM05D003635 ORTHO05D004283 1.9e-96 355.9 194 88.1
Migut.N02978 Erythranthe guttata HOM05D003635 ORTHO05D004283 1.9e-96 355.9 194 88.1
FvH4_1g28630 Fragaria vesca HOM05D003635 ORTHO05D004283 1.9e-96 355.9 194 87.6
Nitab4.5_0000426g0110 Nicotiana tabacum HOM05D003635 ORTHO05D004283 1.9e-96 355.9 194 87.6
Sc06g0001910 Simmondsia chinensis HOM05D003635 ORTHO05D004283 1.9e-96 355.9 194 88.7
Carub.0005s2188 Capsella rubella HOM05D003635 ORTHO05D004283 2.5e-96 355.5 194 89.7
MSTRG.22089 Avicennia marina HOM05D003635 ORTHO05D004283 3.3e-96 355.1 194 87.6
CAN.G1557.8 Capsicum annuum HOM05D003635 ORTHO05D004283 3.3e-96 355.1 194 86.1
Cc00_g29200 Coffea canephora HOM05D003635 ORTHO05D004283 3.3e-96 355.1 194 87.1
Dinv31402 Davidia involucrata HOM05D003635 ORTHO05D004283 3.3e-96 355.1 194 89.2
SGA_v2.0_scaffold54G19634 Striga asiatica HOM05D003635 ORTHO05D004283 3.3e-96 355.1 194 87.6
AagrBONN_evm.TU.Sc2ySwM_368.1182 Anthoceros agrestis HOM05D003635 ORTHO05D004283 4.3e-96 354.8 192 89.6
Gohir.D10G219000 Gossypium hirsutum HOM05D003635 ORTHO05D004283 4.3e-96 354.8 194 89.2
Gorai.011G245700 Gossypium raimondii HOM05D003635 ORTHO05D004283 4.3e-96 354.8 194 89.2
Nn2g12856 Nelumbo nucifera HOM05D003635 ORTHO05D004283 4.3e-96 354.8 193 88.6
SalBow7G2745 Salvia bowleyana HOM05D003635 ORTHO05D004283 5.7e-96 354.4 194 87.6
CDE09G0269 Ceratophyllum demersum HOM05D003635 ORTHO05D004283 7.4e-96 354.0 194 88.1
CARHR289060 Cardamine hirsuta HOM05D003635 ORTHO05D004283 9.7e-96 353.6 194 89.2
Thhalv10006588m.g Eutrema salsugineum HOM05D003635 ORTHO05D004283 1.3e-95 353.2 194 88.7
Thecc.10G059000 Theobroma cacao HOM05D003635 ORTHO05D004283 1.3e-95 353.2 194 88.7
COL.COLO4_10911 Corchorus olitorius HOM05D003635 ORTHO05D004283 1.6e-95 352.8 194 88.7
Lsat_1_v5_gn_8_18261 Lactuca sativa HOM05D003635 ORTHO05D004283 1.6e-95 352.8 195 88.7
PSO384G4083 Papaver somniferum HOM05D003635 ORTHO05D004283 1.6e-95 352.8 193 88.6
Pp3c16_16800 Physcomitrium patens HOM05D003635 ORTHO05D004283 1.6e-95 352.8 192 88.5
Gohir.A05G351700 Gossypium hirsutum HOM05D003635 ORTHO05D004283 2.8e-95 352.1 194 88.1
SGA_v2.0_scaffold364G49990 Striga asiatica HOM05D003635 ORTHO05D004283 2.8e-95 352.1 194 86.6
Duzib114G0516 Durio zibethinus HOM05D003635 ORTHO05D004283 3.7e-95 351.7 194 88.1
Gorai.012G068000 Gossypium raimondii HOM05D003635 ORTHO05D004283 3.7e-95 351.7 194 88.1
PSO339G2718 Papaver somniferum HOM05D003635 ORTHO05D004283 3.7e-95 351.7 193 88.1
Pp3c12_11240 Physcomitrium patens HOM05D003635 ORTHO05D004283 3.7e-95 351.7 192 89.1
HanXRQChr14g0437201 Helianthus annuus HOM05D003635 ORTHO05D004283 6.3e-95 350.9 195 88.7
ATR0820G062 Amborella trichopoda HOM05D003635 ORTHO05D004283 1.8e-94 349.4 192 87.5
Peaxi162Scf00060g00511 Petunia axillaris HOM05D003635 ORTHO05D004283 1.8e-94 349.4 194 86.6
Ciclev10030532m.g Citrus clementina HOM05D003635 ORTHO05D004283 2.4e-94 349.0 194 86.6
SEGI_11055 Sequoiadendron giganteum HOM05D003635 ORTHO05D004283 3.1e-94 348.6 192 87.0
PGR142G3382 Punica granatum HOM05D003635 ORTHO05D004283 6.9e-94 347.4 194 85.6
unitig_736.g22269 Utricularia gibba HOM05D003635 ORTHO05D004283 1.2e-93 346.7 195 86.2
ECA233G0861 Erigeron canadensis HOM05D003635 ORTHO05D004283 2.0e-93 345.9 195 87.7
Aqoxy2G04103 Aquilegia oxysepala HOM05D003635 ORTHO05D004283 3.4e-93 345.1 193 86.5
Pp3c4_5190 Physcomitrium patens HOM05D003635 ORTHO05D004283 3.4e-93 345.1 192 87.0
Mapoly0009s0019 Marchantia polymorpha HOM05D003635 ORTHO05D004283 5.9e-93 344.4 192 87.0
Aqoxy1G01641 Aquilegia oxysepala HOM05D003635 ORTHO05D004283 1.0e-92 343.6 193 86.0
Atru.chr12.571 Acer truncatum HOM05D003635 ORTHO05D004283 2.2e-92 342.4 194 85.6
Haze_16985 Corylus avellana HOM05D003635 ORTHO05D004283 7.2e-91 337.4 194 85.6
HPP92_016709 Vanilla planifolia HOM05D003635 ORTHO05D004283 1.6e-90 336.3 194 84.5
Medtr4g115500 Medicago truncatula HOM05D003635 ORTHO05D004283 6.7e-89 330.9 197 83.8
Medtr4g115810 Medicago truncatula HOM05D003635 ORTHO05D004283 6.7e-89 330.9 197 83.8
SMO116G0157 Selaginella moellendorffii HOM05D003635 ORTHO05D004283 9.1e-86 320.5 192 78.1
RcHm_v2.0_Chr1g0365361 Rosa chinensis HOM05D003635 ORTHO05D004283 2.6e-85 318.9 194 79.9
HPP92_027161 Vanilla planifolia HOM05D003635 ORTHO05D004283 2.7e-82 308.9 194 80.4
AUR62023868 Chenopodium quinoa HOM05D003635 ORTHO05D004283 1.8e-81 306.2 194 74.2
FAN06G2419 Fragaria x ananassa HOM05D003635 ORTHO05D004283 3.9e-81 305.1 194 76.8
FvH4_7g20980 Fragaria vesca HOM05D003635 ORTHO05D004283 5.1e-81 304.7 194 76.8
FAN06G4735 Fragaria x ananassa HOM05D003635 ORTHO05D004283 5.1e-81 304.7 194 76.3
CDE02G2560 Ceratophyllum demersum HOM05D003635 ORTHO05D004283 3.3e-80 302.0 163 89.6
FAN01G1416 Fragaria x ananassa HOM05D000005 ORTHO05D004283 3.3e-80 302.0 194 75.8
FAN10G2700 Fragaria x ananassa HOM05D003635 ORTHO05D004283 1.3e-79 300.1 194 75.8
Cre08.g372800 Chlamydomonas reinhardtii HOM05D003635 ORTHO05D004283 1.7e-79 299.7 194 73.2
MCO14G333 Micromonas commoda HOM05D003635 ORTHO05D004283 4.1e-78 295.0 194 72.2
Zm00001eb231820 Zea mays HOM05D003635 ORTHO05D004283 3.2e-75 285.4 204 70.1
PRCOL_00000086 Prasinoderma coloniale HOM05D003635 ORTHO05D004283 6.7e-73 277.7 192 67.7
Haze_26580 Corylus avellana HOM05D003635 ORTHO05D004283 2.7e-66 255.8 201 61.2
CBR_g32401 Chara braunii HOM05D003635 ORTHO05D004283 2.3e-65 252.7 142 84.5
AUR62002317 Chenopodium quinoa HOM05D003635 ORTHO05D004283 2.3e-57 226.1 184 64.1
FAN03G1481 Fragaria x ananassa HOM05D003635 ORTHO05D004283 3.7e-55 218.8 194 59.8
Nn2g10520 Nelumbo nucifera HOM05D003635 ORTHO05D004283 1.6e-50 203.4 108 89.8
TPR.G14006 Trifolium pratense HOM05D003635 ORTHO05D004283 3.0e-49 199.1 100 99.0
Actinidia13851 Actinidia chinensis HOM05D003635 ORTHO05D004283 2.1e-42 176.4 94 90.4
Sabra10G0164200 Salix brachista HOM05D003635 ORTHO05D004283 1.6e-37 160.2 120 69.2
Gohir.D04G061100 Gossypium hirsutum HOM05D003635 ORTHO05D004283 3.9e-36 155.6 82 90.2
HanXRQChr08g0228691 Helianthus annuus HOM05D003635 ORTHO05D004283 1.6e-34 150.2 82 89.0
GSVIVG01005970001 Vitis vinifera HOM05D003635 ORTHO05D004283 5.1e-20 102.1 55 89.1
Sed0017085 Sechium edule HOM05D003635 ORTHO05D004283 2.5e-11 73.2 119 42.0
BcaC04g23439 Brassica carinata HOM05D011657 ORTHO05D021615 1.5e-08 63.9 78 50.0
C09p08310 Brassica napus HOM05D003635 ORTHO05D021615 2.6e-08 63.2 95 43.2
BolC9t53741H Brassica oleracea HOM05D003635 ORTHO05D021615 2.6e-08 63.2 95 43.2
Psat0s2035g0040 Pisum sativum HOM05D004807 ORTHO05D005915 5.8e-08 62.0 133 27.1
TPR.G32304 Trifolium pratense HOM05D004807 ORTHO05D005915 2.2e-07 60.1 125 28.8
Actinidia29205 Actinidia chinensis HOM05D003635 ORTHO05D004283 2.9e-07 59.7 150 34.0
Phvul.001G200200 Phaseolus vulgaris HOM05D004807 ORTHO05D005915 2.9e-07 59.7 181 25.4
ATR0665G460 Amborella trichopoda HOM05D004807 ORTHO05D005915 3.8e-07 59.3 143 24.5
Lj1A1135G80 Lonicera japonica HOM05D004807 ORTHO05D005915 4.9e-07 58.9 184 24.5
BraA09t36394Z Brassica rapa HOM05D003635 ORTHO05D021615 6.4e-07 58.5 47 68.1
unitig_0.g511 Utricularia gibba HOM05D004807 ORTHO05D005915 6.4e-07 58.5 142 27.5
BcaB04g18703 Brassica carinata HOM05D004807 ORTHO05D005915 8.4e-07 58.2 130 23.8
Ca_09097_v3 Cicer arietinum L. HOM05D004807 ORTHO05D005915 1.1e-06 57.8 125 27.2
Medtr7g107350 Medicago truncatula HOM05D004807 ORTHO05D005915 1.1e-06 57.8 125 27.2
SGA_v2.0_scaffold105G30514 Striga asiatica HOM05D004807 ORTHO05D005915 1.1e-06 57.8 134 26.9
EL10Ac3g06848 Beta vulgaris HOM05D004807 ORTHO05D005915 1.9e-06 57.0 133 27.1
HanXRQChr14g0438891 Helianthus annuus HOM05D004807 ORTHO05D005915 1.9e-06 57.0 168 23.8
Dinv25024 Davidia involucrata HOM05D004807 ORTHO05D005915 4.2e-06 55.8 133 27.1
Lalb_Chr25g0287671 Lupinus albus HOM05D004807 ORTHO05D005915 4.2e-06 55.8 134 24.6
VMungo1383G3705 Vigna mungo HOM05D004807 ORTHO05D005915 4.2e-06 55.8 125 27.2
Migut.J01878 Erythranthe guttata HOM05D004807 ORTHO05D005915 5.4e-06 55.5 138 26.1
Glyma.03G206600 Glycine max HOM05D004807 ORTHO05D005915 7.1e-06 55.1 137 23.4
SalBow6G5976 Salvia bowleyana HOM05D004807 ORTHO05D005915 9.3e-06 54.7 131 27.5


User provided reference genes

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