Gene: Solyc04g010260.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g010260.3
  • Transcript Identifier Solyc04g010260.3.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 3617224-3622207 : negative

Gene Family Information

  • ID HOM05D003635
  • #Genes/#Species 188/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g010260.3.1
  • uniprot A0A3Q7G0H3
  • gene_id Solyc04g010260

Descriptions

  • Description Splicing factor 3B subunit 3 (AHRD V3.3 *** A0A2G3CE29_CAPCH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0055046
ISO
PLAZA Integrative Orthologymicrogametogenesis AT3G55220
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT3G55220
GO:0009846
ISO
PLAZA Integrative Orthologypollen germination AT3G55220
GO:0048481
ISO
PLAZA Integrative Orthologyplant ovule development AT3G55220

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0030620
IBA
GOA DatabaseU2 snRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus
GO:0005686
IBA
GOA DatabaseU2 snRNP

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036322 WD40-repeat-containing domain superfamily
IPR004871 Cleavage/polyadenylation specificity factor, A subunit, C-terminal
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR018846 Cleavage/polyadenylation specificity factor, A subunit, N-terminal
Mapman id Description
16.2.1.2.4.3 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.component SF3B3