Gene: AT3G55200

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G55200
  • Transcript Identifier AT3G55200.1
  • Gene Type Coding gene
  • Location Chr3 : 20460533-20464361 : positive

Gene Family Information

  • ID HOM05D003635
  • #Genes/#Species 188/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G55200.1
  • symbol SAP130a
  • Alias AtSAP130a,Arabidopsis thaliana spliceosome-associated protein 130 a
  • full_name spliceosome-associated protein 130 a
  • uniprot P0DKL4

Descriptions

  • Description Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
  • Computational description Cleavage and polyadenylation specificity factor (CPSF) A subunit protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: WD40 repeat (InterPro:IPR001680), Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (TAIR:AT3G55220.1); Has 1074 Blast hits to 953 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 406; Fungi - 248; Plants - 228; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009555
IMP
Gene Ontologypollen development1
GO:0009846
IMP
Gene Ontologypollen germination1
GO:0048481
IMP
Gene Ontologyplant ovule development1
GO:0055046
IMP
Gene Ontologymicrogametogenesis1
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030620
IBA
Gene OntologyU2 snRNA binding2
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus2
GO:0005634
IEA
InterPronucleus
GO:0005829
HDA
RCA
Gene Ontologycytosol3 4
GO:0005686
IBA
Gene OntologyU2 snRNP2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011044 Quinoprotein amine dehydrogenase, beta chain-like
IPR018846 Cleavage/polyadenylation specificity factor, A subunit, N-terminal
IPR036322 WD40-repeat-containing domain superfamily
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR004871 Cleavage/polyadenylation specificity factor, A subunit, C-terminal
Mapman id Description
16.2.1.2.4.3 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.component SF3B3