Gene: Pp3c12_11240

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c12_11240
  • Transcript Identifier Pp3c12_11240V3.1
  • Gene Type Coding gene
  • Location Chr12 : 7502129-7506546 : negative

Gene Family Information

  • ID HOM05D003635
  • #Genes/#Species 188/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c12_11240V3.1
  • pacid 32974388
  • alias Phpat.012G041100
  • alias Phypa_227044
  • alias Pp1s391_44V6
  • uniprot A0A2K1JQD1

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0055046
ISO
PLAZA Integrative Orthologymicrogametogenesis AT3G55220
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT3G55220
GO:0009846
ISO
PLAZA Integrative Orthologypollen germination AT3G55220
GO:0048481
ISO
PLAZA Integrative Orthologyplant ovule development AT3G55220

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0030620
IBA
GOA DatabaseU2 snRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0005634
IEA
InterPronucleus
GO:0005686
IBA
GOA DatabaseU2 snRNP

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036322 WD40-repeat-containing domain superfamily
IPR018846 Cleavage/polyadenylation specificity factor, A subunit, N-terminal
IPR004871 Cleavage/polyadenylation specificity factor, A subunit, C-terminal
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
Mapman id Description
16.2.1.2.4.3 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.component SF3B3