Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 7.6e-197 690.3 339 100.0
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 1.2e-93 347.4 335 60.3
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 3.4e-80 302.8 335 51.9
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 2.5e-70 270.0 260 63.1
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 2.3e-68 263.5 236 62.3
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 1.1e-67 261.2 190 74.2
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 2.1e-61 240.4 227 57.7
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 4.1e-57 226.1 264 50.8
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 1.0e-47 194.9 231 48.9
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 2.6e-43 180.3 232 49.1
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 3.8e-39 166.4 324 36.7
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 6.5e-39 165.6 323 37.2
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 6.7e-36 155.6 327 33.6
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 1.5e-35 154.5 331 35.6
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 1.5e-35 154.5 306 37.3
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 2.0e-35 154.1 233 40.8
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 2.0e-35 154.1 306 33.3
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.3e-35 153.3 330 36.1
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 7.5e-35 152.1 234 39.3
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 8.3e-34 148.7 308 36.7
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 1.1e-33 148.3 245 41.6
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 4.1e-33 146.4 341 33.7
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 1.6e-32 144.4 229 39.7
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 2.0e-32 144.1 341 32.3
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 1.0e-31 141.7 304 32.2
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.2e-30 136.3 359 33.1
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 4.2e-30 136.3 322 34.5
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.2e-29 134.8 224 38.8
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.7e-29 132.9 354 33.1
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 6.1e-29 132.5 313 33.5
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.0e-28 131.7 333 31.8
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 5.2e-28 129.4 322 32.0
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.5e-27 127.9 316 33.5
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 3.4e-27 126.7 227 38.8
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 2.2e-26 124.0 332 33.1
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.8e-25 120.9 294 30.3
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 7.0e-25 119.0 328 29.9
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.6e-24 117.9 300 32.3
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 2.0e-24 117.5 330 30.3
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 7.7e-24 115.5 370 27.3
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 5.0e-23 112.8 370 27.0
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 5.0e-23 112.8 238 35.7
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 1.9e-22 110.9 355 29.9
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 2.5e-22 110.5 145 43.4
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 4.2e-22 109.8 136 48.5
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 7.2e-22 109.0 331 28.1
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 9.5e-22 108.6 231 37.2
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.8e-21 107.1 226 35.8
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 4.7e-21 106.3 138 43.5
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 6.1e-21 105.9 332 30.1
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 1.0e-20 105.1 120 46.7
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 1.0e-20 105.1 120 47.5
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 1.8e-20 104.4 338 27.5
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 1.8e-20 104.4 326 29.1
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 4.0e-20 103.2 233 30.9
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 5.2e-20 102.8 239 37.2
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 5.2e-20 102.8 333 28.2
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 6.8e-20 102.4 130 46.2
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.2e-19 101.7 342 28.7
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.4e-19 100.1 341 29.6
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 3.4e-19 100.1 330 26.4
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 4.4e-19 99.8 149 39.6
Glyma.15G040900 Glycine max HOM05D006496 ORTHO05D008390 4.4e-19 99.8 153 44.4
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 9.8e-19 98.6 238 35.3
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 1.3e-18 98.2 155 44.5
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 1.7e-18 97.8 337 27.3
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 1.7e-18 97.8 141 41.1
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 2.2e-18 97.4 124 42.7
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 2.2e-18 97.4 140 40.7
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 2.2e-18 97.4 124 42.7
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 2.2e-18 97.4 122 45.9
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 2.8e-18 97.1 134 44.0
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 3.7e-18 96.7 141 39.7
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 4.9e-18 96.3 120 45.8
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 4.9e-18 96.3 350 28.6
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 6.3e-18 95.9 82 57.3
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 8.3e-18 95.5 121 44.6
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 8.3e-18 95.5 121 44.6
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 8.3e-18 95.5 303 28.4
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 1.8e-17 94.4 121 44.6
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 1.8e-17 94.4 175 34.3
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 1.8e-17 94.4 158 39.9
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 4.1e-17 93.2 121 45.5
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 5.4e-17 92.8 342 28.4
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 9.2e-17 92.0 327 28.1
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 9.2e-17 92.0 167 40.1
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 1.2e-16 91.7 332 26.8
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 1.2e-16 91.7 247 31.6
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 1.2e-16 91.7 145 42.1
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.6e-16 91.3 178 36.5
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 4.5e-16 89.7 253 29.6
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.3e-15 88.2 175 37.7
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 1.7e-15 87.8 193 31.6
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 5.0e-15 86.3 360 25.0
Medtr2g037430 Medicago truncatula HOM05D006496 ORTHO05D008390 1.5e-14 84.7 56 73.2
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 9.5e-14 82.0 159 37.1
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 9.5e-14 82.0 142 38.0
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 4.7e-13 79.7 113 42.5
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 7.5e-11 72.4 163 34.4
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 8.3e-10 68.9 213 29.1
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 1.1e-09 68.6 117 40.2
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 1.4e-09 68.2 133 33.1
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 4.1e-09 66.6 58 56.9
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 5.4e-09 66.2 369 22.8
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 9.2e-09 65.5 121 38.0
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 1.6e-08 64.7 261 26.8
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 7.8e-08 62.4 142 35.9
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 1.3e-07 61.6 60 55.0
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 1.3e-07 61.6 245 27.8
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.7e-07 61.2 47 66.0
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 6.6e-07 59.3 131 34.4
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 1.1e-06 58.5 45 53.3
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 1.1e-06 58.5 45 53.3
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 1.1e-06 58.5 45 53.3
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 1.1e-06 58.5 146 32.9
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 1.1e-06 58.5 150 32.0
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.1e-06 58.5 177 28.2
TWI31G0695 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.1e-06 58.5 48 62.5
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 2.5e-06 57.4 128 34.4
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 2.5e-06 57.4 267 29.6
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 4.3e-06 56.6 139 31.7
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 5.6e-06 56.2 139 28.8
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 5.6e-06 56.2 144 27.8
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 5.6e-06 56.2 45 60.0
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 5.6e-06 56.2 126 34.9
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 5.6e-06 56.2 126 34.9
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 5.6e-06 56.2 69 42.0
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 7.3e-06 55.8 167 27.5
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 7.3e-06 55.8 129 36.4
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 9.5e-06 55.5 133 30.8


User provided reference genes

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