Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 9.0e-139 496.9 248 100.0
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 8.9e-70 267.7 260 63.1
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 2.4e-62 243.0 243 55.6
Medtr2g096500 Medicago truncatula HOM05D006496 ORTHO05D008485 3.2e-59 232.6 181 70.7
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 3.4e-53 212.6 242 55.4
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 1.3e-52 210.7 215 55.3
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 6.2e-47 191.8 225 50.2
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 2.7e-42 176.4 244 45.9
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 5.1e-41 172.2 211 49.3
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 1.6e-39 167.2 244 43.9
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 2.8e-31 139.8 252 40.5
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 8.2e-31 138.3 219 41.6
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 4.5e-29 132.5 221 39.8
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 1.0e-28 131.3 230 39.6
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 7.1e-27 125.2 233 38.2
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 3.3e-24 116.3 237 38.0
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 3.3e-24 116.3 208 40.4
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 5.7e-24 115.5 244 32.4
VMungo1080G1046 Vigna mungo HOM05D006496 ORTHO05D008390 1.3e-23 114.4 263 37.3
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 2.2e-23 113.6 244 32.0
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 6.3e-23 112.1 255 35.7
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 2.4e-22 110.2 212 34.4
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.4e-22 110.2 212 35.4
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.4e-22 110.2 236 33.1
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.9e-22 108.6 235 38.3
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 2.6e-21 106.7 236 35.6
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 3.4e-21 106.3 243 34.6
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 3.4e-21 106.3 248 35.5
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 3.4e-21 106.3 234 32.5
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.5e-21 105.9 236 32.2
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 5.9e-21 105.5 243 31.7
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 2.2e-20 103.6 233 36.1
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 3.8e-20 102.8 216 35.2
Glyma.15G040900 Glycine max HOM05D006496 ORTHO05D008390 5.0e-20 102.4 184 39.1
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 5.0e-20 102.4 230 36.5
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 1.9e-19 100.5 257 32.3
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 3.2e-19 99.8 261 32.2
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 9.4e-19 98.2 224 31.7
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 1.2e-18 97.8 267 31.8
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.7e-18 96.7 240 32.5
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.3e-17 93.6 225 32.0
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 6.7e-17 92.0 257 31.1
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 1.1e-16 91.3 209 32.1
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 2.0e-16 90.5 241 32.0
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 3.3e-16 89.7 249 30.9
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 3.3e-16 89.7 233 31.8
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 4.3e-16 89.4 240 32.1
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.8e-15 86.7 209 30.1
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 3.7e-15 86.3 236 32.2
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 6.3e-15 85.5 260 28.5
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 8.2e-15 85.1 279 27.6
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 1.1e-14 84.7 213 29.6
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 1.4e-14 84.3 228 26.3
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 2.4e-14 83.6 260 28.5
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 6.9e-14 82.0 231 28.6
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 6.9e-14 82.0 227 29.1
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 2.6e-13 80.1 243 30.9
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 3.4e-13 79.7 242 29.8
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 4.5e-13 79.3 226 27.9
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 4.5e-13 79.3 216 31.0
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 7.7e-13 78.6 215 29.3
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 1.3e-12 77.8 236 28.0
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 2.9e-12 76.6 213 28.6
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 5.0e-12 75.9 224 29.5
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 1.1e-11 74.7 213 27.2
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 1.4e-11 74.3 301 26.2
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 1.4e-11 74.3 78 51.3
Sc06g0008220 Simmondsia chinensis HOM05D006496 ORTHO05D008390 2.5e-11 73.6 92 45.7
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.2e-11 73.2 217 29.0
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 4.2e-11 72.8 208 30.3
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 1.6e-10 70.9 264 27.7
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 2.7e-10 70.1 205 29.3
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 3.6e-10 69.7 86 46.5
Medtr2g037430 Medicago truncatula HOM05D006496 ORTHO05D008390 4.7e-10 69.3 57 61.4
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 7.9e-10 68.6 254 27.2
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 1.0e-09 68.2 206 31.1
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 2.3e-09 67.0 72 52.8
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.3e-09 67.0 251 29.5
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 6.7e-09 65.5 60 55.0
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 8.8e-09 65.1 231 29.9
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 1.5e-08 64.3 204 25.5
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 2.0e-08 63.9 70 48.6
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 2.6e-08 63.5 72 44.4
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 4.4e-08 62.8 117 39.3
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 1.3e-07 61.2 51 58.8
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 1.3e-07 61.2 221 25.8
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 2.8e-07 60.1 77 44.2
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 4.8e-07 59.3 49 57.1
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 6.3e-07 58.9 76 44.7
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 6.3e-07 58.9 67 46.3
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 6.3e-07 58.9 67 46.3
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 8.2e-07 58.5 67 47.8
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 8.2e-07 58.5 67 47.8
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 8.2e-07 58.5 67 47.8
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 8.2e-07 58.5 89 39.3
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 1.1e-06 58.2 58 53.4
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 1.1e-06 58.2 208 28.4
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 1.4e-06 57.8 58 53.4
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 1.4e-06 57.8 72 43.1
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 1.4e-06 57.8 53 52.8
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 1.8e-06 57.4 49 57.1
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 1.8e-06 57.4 58 51.7
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 1.8e-06 57.4 201 26.4
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 1.8e-06 57.4 212 27.8
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 2.4e-06 57.0 91 42.9
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 2.4e-06 57.0 58 51.7
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 2.4e-06 57.0 98 33.7
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 3.1e-06 56.6 71 39.4
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 4.1e-06 56.2 80 40.0
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 4.1e-06 56.2 221 24.9
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 5.3e-06 55.8 93 35.5
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 9.1e-06 55.1 221 25.3
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 9.1e-06 55.1 49 55.1
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 9.1e-06 55.1 108 34.3
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 9.1e-06 55.1 46 54.3


User provided reference genes

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