Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 3.2e-256 887.9 440 100.0
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 4.0e-238 827.8 442 91.2
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 8.6e-233 810.1 442 89.4
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 9.8e-229 796.6 442 88.9
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 8.3e-220 766.9 439 85.2
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 1.2e-215 753.1 439 83.8
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 4.0e-214 748.0 443 82.6
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 2.6e-213 745.3 442 81.4
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 9.2e-211 736.9 439 81.3
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 7.8e-210 733.8 453 78.1
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 3.6e-207 724.9 450 77.3
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 4.7e-207 724.5 446 80.0
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 6.0e-194 681.0 450 73.6
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 5.1e-193 677.9 449 73.1
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 5.1e-193 677.9 450 73.1
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 8.7e-193 677.2 447 73.6
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 1.9e-192 676.0 441 73.5
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 4.3e-192 674.9 453 72.8
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 2.8e-191 672.2 450 72.9
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 1.8e-190 669.5 450 72.2
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 2.4e-190 669.1 450 73.8
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 5.3e-190 667.9 450 73.1
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 6.9e-190 667.5 450 70.9
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 6.9e-190 667.5 450 73.1
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 2.0e-189 666.0 450 73.1
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 3.4e-189 665.2 450 73.1
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 4.4e-189 664.8 458 71.4
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 1.7e-188 662.9 450 71.3
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 2.2e-188 662.5 453 71.3
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 1.1e-187 660.2 438 72.4
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 4.2e-187 658.3 458 71.2
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 9.3e-187 657.1 458 70.5
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 9.3e-187 657.1 446 71.5
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 2.7e-186 655.6 485 67.0
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 1.3e-185 653.3 456 70.2
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 3.9e-185 651.7 447 68.9
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 1.5e-184 649.8 436 72.5
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 7.3e-184 647.5 429 72.0
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 1.3e-183 646.7 456 70.2
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 3.6e-183 645.2 432 70.1
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 1.8e-182 642.9 453 67.8
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 2.4e-182 642.5 438 69.2
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 5.3e-182 641.3 450 70.7
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 6.9e-182 641.0 458 68.6
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 1.2e-181 640.2 454 70.0
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 4.5e-181 638.3 457 69.1
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 4.9e-180 634.8 453 68.4
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 2.4e-179 632.5 454 69.4
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 3.2e-179 632.1 449 68.4
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 4.2e-179 631.7 452 67.3
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 4.2e-179 631.7 449 69.0
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 4.2e-179 631.7 454 69.4
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 5.4e-179 631.3 455 68.4
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 6.0e-178 627.9 457 66.7
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 6.0e-178 627.9 436 70.6
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 1.8e-177 626.3 454 68.7
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 3.0e-177 625.5 454 68.9
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 6.7e-177 624.4 456 66.4
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 4.3e-176 621.7 454 67.8
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 9.6e-176 620.5 444 69.1
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 2.1e-175 619.4 412 73.5
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 8.1e-175 617.5 456 66.7
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 8.1e-175 617.5 454 67.4
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 1.1e-174 617.1 448 66.7
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 1.4e-174 616.7 451 66.5
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 4.0e-174 615.1 455 66.6
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 5.3e-174 614.8 449 66.8
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 9.0e-174 614.0 458 65.9
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 2.9e-172 609.0 457 65.6
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 8.4e-172 607.4 450 66.4
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 8.4e-172 607.4 402 73.6
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 1.9e-171 606.3 509 59.3
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 4.2e-171 605.1 417 70.5
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 9.3e-171 604.0 450 65.1
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 6.0e-170 601.3 456 65.8
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 2.3e-169 599.4 453 66.2
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 1.5e-168 596.7 450 66.7
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 2.4e-166 589.3 451 65.0
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 2.0e-165 586.3 453 64.7
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 4.5e-165 585.1 450 65.1
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 4.5e-165 585.1 450 65.1
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 1.9e-163 579.7 450 63.6
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 5.5e-163 578.2 453 62.0
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 5.5e-163 578.2 451 63.4
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 7.1e-163 577.8 409 69.7
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 1.6e-162 576.6 451 63.6
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 2.1e-162 576.2 448 62.9
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 2.7e-162 575.9 457 64.1
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 1.0e-161 573.9 436 67.0
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 2.4e-158 562.8 384 71.1
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 1.2e-157 560.5 382 72.5
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 1.5e-157 560.1 410 67.1
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 5.9e-157 558.1 441 63.5
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 1.0e-153 547.4 404 66.8
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 1.1e-150 537.3 445 58.4
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 1.6e-138 496.9 372 66.1
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 8.3e-127 458.0 456 49.3
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 4.1e-126 455.7 374 63.4
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 1.2e-122 444.1 334 66.2
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 1.0e-121 441.0 446 49.1
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 5.4e-118 428.7 451 48.8
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 1.6e-117 427.2 455 52.5
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 7.7e-117 424.9 442 47.3
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 8.9e-113 411.4 304 66.4
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 5.0e-108 395.6 308 63.6
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 6.6e-100 368.6 512 38.5
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 7.5e-96 355.1 376 51.1
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 1.7e-87 327.4 449 41.2
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 5.8e-80 302.4 241 65.6
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 3.5e-69 266.5 196 61.7
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 6.6e-68 262.3 221 57.5
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 2.4e-65 253.8 448 35.0
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 1.6e-58 231.1 185 59.5
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.5e-40 171.4 288 35.8
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 3.0e-36 157.1 404 29.0
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 4.1e-33 146.7 107 64.5
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 3.3e-19 100.5 122 37.7
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 3.4e-11 73.9 330 22.1
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 1.2e-08 65.5 338 23.7
HPP92_025390 Vanilla planifolia HOM05D006183 ORTHO05D007844 1.2e-08 65.5 294 23.5
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 3.5e-08 63.9 319 21.3
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 4.5e-08 63.5 326 22.4
Migut.D00486 Erythranthe guttata HOM05D006183 ORTHO05D007844 7.7e-08 62.8 239 24.7
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 7.7e-08 62.8 326 22.4
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 1.3e-07 62.0 177 24.9
Zm00001eb222270 Zea mays HOM05D006183 ORTHO05D007844 2.2e-07 61.2 261 24.1
Aqoxy5G00112 Aquilegia oxysepala HOM05D006183 ORTHO05D007844 2.9e-07 60.8 261 23.0
Potri.014G193500 Populus trichocarpa HOM05D006183 ORTHO05D007844 3.8e-07 60.5 242 24.8
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 5.0e-07 60.1 347 21.9
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 5.0e-07 60.1 134 27.6
SalBow4G1671 Salvia bowleyana HOM05D006183 ORTHO05D007844 8.5e-07 59.3 227 23.3
Hma1.2p1_1001F.1_g246600 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 1.1e-06 58.9 195 26.7
Hma1.2p1_1001F.1_g246610 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 1.1e-06 58.9 195 26.7
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 1.5e-06 58.5 125 26.4
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 1.5e-06 58.5 134 26.9
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 1.9e-06 58.2 125 25.6
SGA_v2.0_scaffold1G00669 Striga asiatica HOM05D006183 ORTHO05D007844 1.9e-06 58.2 227 23.8
MSTRG.18360 Avicennia marina HOM05D006183 ORTHO05D007844 2.5e-06 57.8 239 23.8
MBI10_g16795_MAGBIO Magnolia biondii HOM05D006183 ORTHO05D007844 2.5e-06 57.8 260 23.1
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 3.2e-06 57.4 126 27.8
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 3.2e-06 57.4 129 24.8
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 3.2e-06 57.4 129 24.8
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 3.2e-06 57.4 117 25.6
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 3.2e-06 57.4 122 25.4
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 4.2e-06 57.0 169 24.9
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 4.2e-06 57.0 324 19.8
CSS0000649 Camellia sinensis var. sinensis HOM05D003769 ORTHO05D004521 5.5e-06 56.6 178 25.8
CARHR040110 Cardamine hirsuta HOM05D001978 ORTHO05D003036 7.2e-06 56.2 218 24.8
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 7.2e-06 56.2 245 22.4
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 9.4e-06 55.8 117 24.8
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 9.4e-06 55.8 128 28.1
MELO3C002081.2 Cucumis melo HOM05D003769 ORTHO05D004521 9.4e-06 55.8 224 23.2


User provided reference genes

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