Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 3.3e-229 798.5 563 100.0
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 2.3e-166 589.7 548 83.4
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 6.3e-156 555.1 549 81.8
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 4.0e-150 535.8 547 72.6
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 3.6e-143 512.7 550 75.6
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 3.6e-135 486.1 550 72.9
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 1.4e-134 484.2 548 67.3
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 2.7e-130 469.9 550 71.3
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 1.7e-129 467.2 549 66.3
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 1.4e-126 457.6 494 72.7
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 1.9e-120 437.2 543 64.6
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 1.4e-118 431.0 548 65.0
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 5.8e-117 425.6 563 66.1
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 8.7e-113 411.8 453 72.0
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 2.8e-111 406.8 491 60.1
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 6.9e-110 402.1 490 58.6
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 1.5e-109 401.0 548 59.5
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 6.4e-108 395.6 556 60.6
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 8.4e-108 395.2 563 62.0
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 3.2e-107 393.3 543 63.7
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 1.2e-106 391.3 535 60.6
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 4.3e-104 382.9 563 61.6
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 1.8e-102 377.5 563 57.5
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 4.0e-102 376.3 528 50.8
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 4.0e-102 376.3 531 50.5
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 4.5e-101 372.9 523 60.8
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 6.5e-100 369.0 519 52.0
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 1.1e-99 368.2 564 59.8
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 2.5e-99 367.1 508 63.8
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.6e-98 364.4 545 60.2
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 1.6e-98 364.4 531 53.7
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 3.5e-98 363.2 542 64.0
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 3.5e-98 363.2 531 53.7
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 3.9e-97 359.8 515 65.6
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 1.9e-96 357.5 515 65.4
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 2.5e-96 357.1 431 58.2
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 3.3e-96 356.7 547 58.5
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 5.7e-96 355.9 567 54.1
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 5.7e-96 355.9 493 55.6
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 7.4e-96 355.5 465 57.6
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 9.6e-96 355.1 527 45.7
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 4.8e-95 352.8 561 59.5
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 2.4e-94 350.5 534 62.7
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 3.1e-94 350.1 543 61.9
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 1.2e-93 348.2 553 62.0
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 2.0e-93 347.4 549 52.8
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 3.4e-93 346.7 465 54.6
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 3.8e-92 343.2 560 43.8
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 1.6e-90 337.8 501 54.3
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 1.3e-89 334.7 546 51.1
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.1e-88 331.6 614 46.3
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 1.9e-88 330.9 524 59.2
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 2.5e-88 330.5 484 53.7
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 1.3e-87 328.2 468 60.5
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 2.8e-87 327.0 544 49.6
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 2.4e-86 323.9 511 49.7
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 3.2e-83 313.5 548 55.5
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 9.4e-83 312.0 544 47.8
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 1.2e-82 311.6 452 61.1
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 2.1e-82 310.8 531 58.0
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 2.1e-82 310.8 476 62.6
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 2.1e-82 310.8 477 54.5
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 1.0e-81 308.5 524 57.4
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 1.8e-81 307.8 526 57.8
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 3.0e-81 307.0 502 48.4
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 6.7e-81 305.8 465 49.9
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 8.8e-81 305.4 518 57.7
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 1.1e-80 305.1 525 57.7
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 1.3e-79 301.6 525 57.1
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 2.8e-79 300.4 528 56.6
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 9.1e-78 295.4 422 63.0
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 1.2e-77 295.0 527 56.5
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 4.5e-77 293.1 522 56.5
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 1.3e-76 291.6 541 56.0
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 2.2e-76 290.8 546 48.0
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 1.1e-75 288.5 527 56.2
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 1.4e-75 288.1 546 52.7
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 3.2e-75 287.0 543 52.9
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 3.6e-74 283.5 519 57.0
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 1.4e-73 281.6 523 55.6
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 1.8e-73 281.2 508 53.3
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 1.1e-72 278.5 523 55.4
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 1.1e-72 278.5 487 44.4
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 3.3e-72 276.9 543 40.9
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 9.7e-72 275.4 542 56.1
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 2.8e-71 273.9 383 53.5
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 1.4e-70 271.6 542 46.3
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 1.8e-70 271.2 535 57.4
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 2.4e-70 270.8 318 59.4
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 1.5e-69 268.1 533 39.0
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 1.5e-67 261.5 533 49.7
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 1.2e-66 258.5 460 51.7
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 6.1e-66 256.1 526 47.5
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 1.4e-65 255.0 280 68.2
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 2.3e-65 254.2 473 49.5
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 2.3e-65 254.2 473 45.9
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 1.5e-64 251.5 474 47.0
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 3.3e-64 250.4 517 47.2
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 7.4e-64 249.2 320 60.6
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.6e-58 231.5 417 57.1
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 6.8e-57 226.1 542 35.6
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 2.8e-55 220.7 457 32.8
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 8.8e-49 199.1 307 53.1
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 1.8e-46 191.4 129 72.9
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 6.1e-42 176.4 211 46.9
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 1.2e-40 172.2 315 49.8
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 2.2e-39 167.9 202 67.8
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 1.6e-37 161.8 208 51.9
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 8.0e-34 149.4 138 54.3
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.2e-26 125.6 337 26.7
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 6.2e-26 123.2 317 35.0
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 2.3e-25 121.3 154 42.9
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 3.1e-25 120.9 96 59.4
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 5.4e-22 110.2 399 36.1
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 4.6e-21 107.1 329 24.0
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 1.1e-19 102.4 85 60.0
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.1e-18 98.2 313 39.0
BcaB01g04214 Brassica carinata HOM05D005626 ORTHO05D007372 9.9e-16 89.4 84 56.0
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 1.9e-14 85.1 60 66.7
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 9.2e-14 82.8 139 35.3
Lj1C1019T10 Lonicera japonica HOM05D005626 ORTHO05D007372 1.6e-13 82.0 81 53.1
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 3.5e-13 80.9 53 75.5
Lj1A1021T50 Lonicera japonica HOM05D005626 ORTHO05D007372 1.3e-12 79.0 155 39.4
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 2.8e-10 71.2 141 28.4
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 3.6e-10 70.9 139 30.9
MD07G1293500 Malus domestica HOM05D005626 ORTHO05D007372 2.4e-09 68.2 52 59.6
SEGI_36936 Sequoiadendron giganteum HOM05D005626 ORTHO05D007372 1.2e-08 65.9 75 45.3
MD07G1293400 Malus domestica HOM05D005626 ORTHO05D007372 1.7e-07 62.0 72 48.6
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 5.4e-06 57.0 107 35.5


User provided reference genes

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