Gene: SGA_v2.0_scaffold192G40528
General Information
Structural Information
- Species Striga asiatica
- Gene Identifier SGA_v2.0_scaffold192G40528
- Transcript Identifier SGA_v2.0_scaffold192T40528
- Gene Type Coding gene
- Location scaffold192 : 116545-135801 : positive
Gene Family Information
- ID HOM05D005626
- #Genes/#Species 137/91
- Phylogenetic origin
- ID ORTHO05D007032
- #Genes/#Species 135/90
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
Descriptions
- product RNA-binding KH domain-containing protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010286 | ISO | PLAZA Integrative Orthology | heat acclimation | AT5G53060 |
| GO:1900150 | ISO | PLAZA Integrative Orthology | regulation of defense response to fungus | AT5G53060 |
| GO:0031053 | ISO | PLAZA Integrative Orthology | primary miRNA processing | AT5G53060 |
| GO:0006970 | ISO | PLAZA Integrative Orthology | response to osmotic stress | AT5G53060 |
| GO:0010468 | ISO | PLAZA Integrative Orthology | regulation of gene expression | AT5G53060 |
| GO:0009867 | ISO | PLAZA Integrative Orthology | jasmonic acid mediated signaling pathway | AT5G53060 |
| GO:0009658 | ISO | PLAZA Integrative Orthology | chloroplast organization | AT5G53080 |
| GO:0031425 | ISO | PLAZA Integrative Orthology | chloroplast RNA processing | AT5G53080 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0070878 | ISO | PLAZA Integrative Orthology | primary miRNA binding | AT5G53060 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G53080 |
| GO:0010445 | ISO | PLAZA Integrative Orthology | nuclear dicing body | AT5G53060 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR029058 | Alpha/Beta hydrolase fold |
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR036612 | K Homology domain, type 1 superfamily |
| IPR000073 | Alpha/beta hydrolase fold-1 |
| IPR004087 | K Homology domain |
| IPR015419 | CTAG/Pcc1 family |
| IPR004088 | K Homology domain, type 1 |
| IPR019734 | Tetratricopeptide repeat |
| Mapman id | Description |
|---|---|
| 16.11.3.3.5 | RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing co-factor (WTG1) |
| 16.5.2.2.4 | RNA processing.RNA modification.N6-threonylcarbamoylation.KEOPS/EKC threonylcarbamoyl-AMP synthase complex.component PCC1 |