Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G33074 Trifolium pratense HOM05D003441 ORTHO05D004516 8.9e-119 430.3 213 100.0
Medtr8g098675 Medicago truncatula HOM05D003441 ORTHO05D004516 6.0e-115 417.5 213 95.8
Ca_10937_v3 Cicer arietinum L. HOM05D003441 ORTHO05D004516 7.8e-115 417.2 213 95.8
Psat7g031680 Pisum sativum HOM05D003441 ORTHO05D004516 1.4e-111 406.4 213 93.0
Lj4g0015025 Lotus japonicus HOM05D003441 ORTHO05D004516 2.0e-110 402.5 213 93.0
arahy.Tifrunner.gnm1.ann1.5RI6ER Arachis hypogaea HOM05D003441 ORTHO05D004516 9.9e-110 400.2 213 91.5
Phvul.002G291500 Phaseolus vulgaris HOM05D003441 ORTHO05D004516 2.2e-109 399.1 213 91.1
VMungo0251G2080 Vigna mungo HOM05D003441 ORTHO05D004516 2.9e-109 398.7 213 91.1
Lalb_Chr16g0390181 Lupinus albus HOM05D003441 ORTHO05D004516 3.8e-109 398.3 213 91.1
Glyma.05G209700 Glycine max HOM05D003441 ORTHO05D004516 8.4e-109 397.1 213 90.1
Glyma.08G016400 Glycine max HOM05D003441 ORTHO05D004516 1.4e-108 396.4 213 90.1
Lalb_Chr05g0224631 Lupinus albus HOM05D003441 ORTHO05D004516 5.4e-108 394.4 213 90.1
Nn6g33339 Nelumbo nucifera HOM05D003441 ORTHO05D004516 7.8e-107 390.6 214 89.7
arahy.Tifrunner.gnm1.ann1.75Q964 Arachis hypogaea HOM05D003441 ORTHO05D004516 1.1e-105 386.7 237 82.3
Dinv37619 Davidia involucrata HOM05D003441 ORTHO05D004516 1.9e-105 386.0 214 89.3
Sc07g0009820 Simmondsia chinensis HOM05D003441 ORTHO05D004516 1.6e-104 382.9 214 88.3
SalBow1G4213 Salvia bowleyana HOM05D003441 ORTHO05D004516 2.1e-104 382.5 214 87.9
SalBow1G5824 Salvia bowleyana HOM05D003441 ORTHO05D004516 2.1e-104 382.5 214 87.9
Cpa.g.sc180.13 Carica papaya HOM05D003441 ORTHO05D004516 3.6e-104 381.7 214 88.3
HanXRQChr17g0533461 Helianthus annuus HOM05D003441 ORTHO05D004516 4.8e-104 381.3 213 87.8
Thecc.03G282800 Theobroma cacao HOM05D003441 ORTHO05D004516 8.1e-104 380.6 214 88.8
COL.COLO4_34498 Corchorus olitorius HOM05D003441 ORTHO05D004516 1.1e-103 380.2 214 88.8
CSS0029160 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 1.4e-103 379.8 214 87.4
CSS0043381 Camellia sinensis var. sinensis HOM05D003441 ORTHO05D004516 1.4e-103 379.8 214 87.4
TAR636G0201 Trochodendron aralioides HOM05D003441 ORTHO05D004516 2.4e-103 379.0 214 88.8
Solyc08g081340.4 Solanum lycopersicum HOM05D003441 ORTHO05D004516 3.1e-103 378.6 214 86.4
Sopen08g029660 Solanum pennellii HOM05D003441 ORTHO05D004516 3.1e-103 378.6 214 86.4
CANSAT25G0732 Cannabis sativa HOM05D003441 ORTHO05D004516 4.0e-103 378.3 214 87.4
TWI15G1203 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 5.3e-103 377.9 214 89.3
Lj8A218G25 Lonicera japonica HOM05D003441 ORTHO05D004516 9.0e-103 377.1 214 86.4
TWI15G1061 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 9.0e-103 377.1 214 88.8
MSTRG.11971 Avicennia marina HOM05D003441 ORTHO05D004516 1.2e-102 376.7 214 86.4
Gorai.007G023800 Gossypium raimondii HOM05D003441 ORTHO05D004516 1.2e-102 376.7 214 87.9
Atru.chr9.2153 Acer truncatum HOM05D003441 ORTHO05D004516 1.5e-102 376.3 214 87.4
Duzib084G0223 Durio zibethinus HOM05D003441 ORTHO05D004516 2.0e-102 375.9 214 88.3
PGR042G0359 Punica granatum HOM05D003441 ORTHO05D004516 2.6e-102 375.6 213 85.4
Aqoxy1G00680 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 7.6e-102 374.0 214 86.4
Ah.12g058870 Amaranthus hybridus HOM05D003441 ORTHO05D004516 9.9e-102 373.6 214 86.0
Duzib205G0291 Durio zibethinus HOM05D003441 ORTHO05D004516 9.9e-102 373.6 213 87.3
AUR62010445 Chenopodium quinoa HOM05D003441 ORTHO05D004516 1.3e-101 373.2 214 85.5
Prupe.5G104000 Prunus persica HOM05D003441 ORTHO05D004516 4.9e-101 371.3 214 85.5
Eucgr.E00638 Eucalyptus grandis HOM05D003441 ORTHO05D004516 6.4e-101 370.9 213 85.9
AUR62030470 Chenopodium quinoa HOM05D003441 ORTHO05D004516 8.4e-101 370.5 214 85.0
Gohir.A11G022800 Gossypium hirsutum HOM05D003441 ORTHO05D004516 8.4e-101 370.5 217 85.7
Hund10975 Selenicereus undatus HOM05D003441 ORTHO05D004516 8.4e-101 370.5 214 85.5
HanXRQChr06g0165951 Helianthus annuus HOM05D003441 ORTHO05D004516 1.1e-100 370.2 213 85.9
AL7G48050 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 1.9e-100 369.4 214 86.0
QL12p032410 Quercus lobata HOM05D003441 ORTHO05D004516 3.2e-100 368.6 218 85.8
Manes.02G021700 Manihot esculenta HOM05D003441 ORTHO05D004516 5.4e-100 367.9 213 86.4
Rhsim02G0234100 Rhododendron simsii HOM05D003441 ORTHO05D004516 5.4e-100 367.9 225 82.7
ATR0661G194 Amborella trichopoda HOM05D003441 ORTHO05D004516 7.1e-100 367.5 216 84.7
THA.LOC104817891 Tarenaya hassleriana HOM05D003441 ORTHO05D004516 9.3e-100 367.1 214 85.0
Potri.001G101300 Populus trichocarpa HOM05D003441 ORTHO05D004516 1.2e-99 366.7 214 84.6
Haze_08814 Corylus avellana HOM05D003441 ORTHO05D004516 2.7e-99 365.5 223 83.0
Gohir.D03G149600 Gossypium hirsutum HOM05D003441 ORTHO05D004516 3.5e-99 365.2 214 85.5
Gorai.003G156900 Gossypium raimondii HOM05D003441 ORTHO05D004516 3.5e-99 365.2 214 85.5
CARHR212960 Cardamine hirsuta HOM05D003441 ORTHO05D004516 1.0e-98 363.6 214 85.0
Nitab4.5_0001220g0100 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.0e-98 363.6 214 84.6
AT5G41370 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 1.3e-98 363.2 214 84.1
EL10Ac5g12531 Beta vulgaris HOM05D003441 ORTHO05D004516 1.3e-98 363.2 215 84.2
Carub.0007s3411 Capsella rubella HOM05D003441 ORTHO05D004516 1.7e-98 362.8 214 84.6
Thhalv10027651m.g Eutrema salsugineum HOM05D003441 ORTHO05D004516 1.7e-98 362.8 214 84.6
ECA246G2088 Erigeron canadensis HOM05D003441 ORTHO05D004516 2.3e-98 362.5 213 84.5
RcHm_v2.0_Chr7g0197061 Rosa chinensis HOM05D003441 ORTHO05D004516 2.3e-98 362.5 214 84.6
TWI81G0502 Tripterygium wilfordii HOM05D003441 ORTHO05D004516 3.9e-98 361.7 214 86.0
Actinidia28364 Actinidia chinensis HOM05D003441 ORTHO05D004516 1.1e-97 360.1 214 83.6
HPP92_021979 Vanilla planifolia HOM05D003441 ORTHO05D004516 1.1e-97 360.1 214 84.1
CiPaw.12G091100 Carya illinoinensis HOM05D003441 ORTHO05D004516 1.5e-97 359.8 226 81.0
FvH4_5g02840 Fragaria vesca HOM05D003441 ORTHO05D004516 1.5e-97 359.8 214 84.6
AT5G41360 Arabidopsis thaliana HOM05D003441 ORTHO05D004516 1.9e-97 359.4 214 84.1
AL7G48070 Arabidopsis lyrata HOM05D003441 ORTHO05D004516 9.6e-97 357.1 214 82.7
Sed0019074 Sechium edule HOM05D003441 ORTHO05D004516 9.6e-97 357.1 214 82.2
Carub.0007s3412 Capsella rubella HOM05D003441 ORTHO05D004516 4.8e-96 354.8 213 83.6
Gohir.A03G019400 Gossypium hirsutum HOM05D003441 ORTHO05D004516 6.2e-96 354.4 220 82.3
MELO3C005694.2 Cucumis melo HOM05D003441 ORTHO05D004516 8.1e-96 354.0 213 81.7
PSO017G3334 Papaver somniferum HOM05D003441 ORTHO05D004516 1.1e-95 353.6 214 82.2
PSO421G0274 Papaver somniferum HOM05D003441 ORTHO05D004516 1.1e-95 353.6 214 82.2
CsaV3_5G002620 Cucumis sativus L. HOM05D003441 ORTHO05D004516 3.1e-95 352.1 213 80.3
Migut.E01191 Erythranthe guttata HOM05D003441 ORTHO05D004516 4.0e-95 351.7 217 82.0
Sp7g00580 Schrenkiella parvula HOM05D003441 ORTHO05D004516 5.3e-95 351.3 213 82.6
SpUn0010_0060 Schrenkiella parvula HOM05D003441 ORTHO05D004516 5.3e-95 351.3 213 82.6
Os01g0691600 Oryza sativa ssp. japonica HOM05D003441 ORTHO05D004516 6.9e-95 350.9 214 80.8
Zm00001eb156220 Zea mays HOM05D003441 ORTHO05D004516 2.0e-94 349.4 214 80.8
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 3.4e-94 348.6 212 82.5
MD06G1087900 Malus domestica HOM05D003441 ORTHO05D004516 7.6e-94 347.4 214 82.2
Peaxi162Scf00074g02032 Petunia axillaris HOM05D003441 ORTHO05D004516 1.3e-93 346.7 214 81.3
GSVIVG01019392001 Vitis vinifera HOM05D003441 ORTHO05D004516 1.3e-93 346.7 293 64.5
Nitab4.5_0001522g0040 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.7e-93 346.3 214 81.3
BcaB02g07896 Brassica carinata HOM05D003441 ORTHO05D004516 2.2e-93 345.9 213 81.2
BcaB06g27616 Brassica carinata HOM05D003441 ORTHO05D004516 2.9e-93 345.5 213 81.7
Lsat_1_v5_gn_3_6121 Lactuca sativa HOM05D003441 ORTHO05D004516 2.9e-93 345.5 213 81.2
A04p14500 Brassica napus HOM05D003441 ORTHO05D004516 3.8e-93 345.1 213 81.7
BraA04t17095Z Brassica rapa HOM05D003441 ORTHO05D004516 3.8e-93 345.1 213 81.7
Nitab4.5_0004114g0020 Nicotiana tabacum HOM05D003441 ORTHO05D004516 4.9e-93 344.7 214 80.4
BcaC02g08964 Brassica carinata HOM05D003441 ORTHO05D004516 6.4e-93 344.4 213 81.7
C04p48400 Brassica napus HOM05D003441 ORTHO05D004516 8.4e-93 344.0 213 81.2
BolC4t26434H Brassica oleracea HOM05D003441 ORTHO05D004516 8.4e-93 344.0 213 81.2
MBI04_g41820_MAGBIO Magnolia biondii HOM05D003441 ORTHO05D004516 1.4e-92 343.2 214 82.2
CAN.G532.8 Capsicum annuum HOM05D003441 ORTHO05D004516 1.9e-92 342.8 214 80.8
Cc08_g15010 Coffea canephora HOM05D003441 ORTHO05D004516 3.2e-92 342.0 214 79.9
MBI04_g35068_MAGBIO Magnolia biondii HOM05D003441 ORTHO05D004516 3.2e-92 342.0 214 82.2
Aa31LG5G13590 Aethionema arabicum HOM05D003441 ORTHO05D004516 5.4e-92 341.3 214 81.8
Aqoxy5G02024 Aquilegia oxysepala HOM05D003441 ORTHO05D004516 2.1e-91 339.3 214 78.0
RcHm_v2.0_Chr1g0341861 Rosa chinensis HOM05D003441 ORTHO05D004516 2.7e-91 339.0 229 75.5
FAN13G0786 Fragaria x ananassa HOM05D003441 ORTHO05D004516 6.0e-91 337.8 214 81.3
RcHm_v2.0_Chr1g0341621 Rosa chinensis HOM05D003441 ORTHO05D004516 6.0e-91 337.8 216 78.2
DCAR_005566 Daucus carota HOM05D003441 ORTHO05D004516 1.0e-90 337.0 213 80.3
FAN04G2979 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.0e-90 337.0 214 81.3
FAN18G3267 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.3e-90 336.7 214 80.8
SGA_v2.0_scaffold144G35916 Striga asiatica HOM05D003441 ORTHO05D004516 2.3e-90 335.9 214 80.4
SHI07186 Sapria himalayana HOM05D003441 ORTHO05D004516 3.9e-90 335.1 239 73.2
PGSC0003DMG400012332 Solanum tuberosum HOM05D003441 ORTHO05D004516 5.1e-90 334.7 214 79.0
Oeu030097.4 Olea europaea HOM05D003441 ORTHO05D004516 1.1e-89 333.6 214 79.0
FvH4_7g08220 Fragaria vesca HOM05D003441 ORTHO05D004516 5.6e-89 331.3 214 77.1
Lj2C182G1 Lonicera japonica HOM05D003441 ORTHO05D004516 7.4e-89 330.9 214 79.4
A07p20760 Brassica napus HOM05D003441 ORTHO05D004516 1.6e-88 329.7 204 80.9
BraA07t29768Z Brassica rapa HOM05D003441 ORTHO05D004516 3.7e-88 328.6 204 80.4
C06p19750 Brassica napus HOM05D003441 ORTHO05D004516 1.1e-87 327.0 216 77.3
BcaC08g44523 Brassica carinata HOM05D003441 ORTHO05D004516 1.4e-87 326.6 213 77.9
Pp3c6_13890 Physcomitrium patens HOM05D003441 ORTHO05D004516 6.9e-87 324.3 216 75.5
Mapoly0037s0100 Marchantia polymorpha HOM05D003441 ORTHO05D004516 1.1e-84 317.0 217 75.1
FvH4_7g07850 Fragaria vesca HOM05D003441 ORTHO05D004516 5.5e-84 314.7 226 70.8
AagrBONN_evm.TU.Sc2ySwM_368.2338 Anthoceros agrestis HOM05D003441 ORTHO05D004516 7.1e-84 314.3 216 74.5
FAN08G0848 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.6e-83 313.2 214 77.1
ClCG01G002520 Citrullus lanatus HOM05D003441 ORTHO05D004516 2.7e-83 312.4 214 74.3
FAN06G2516 Fragaria x ananassa HOM05D003441 ORTHO05D004516 5.1e-82 308.1 229 69.4
FAN10G3500 Fragaria x ananassa HOM05D003441 ORTHO05D004516 6.7e-82 307.8 226 69.5
Sabra01G0076300 Salix brachista HOM05D003441 ORTHO05D004516 1.1e-81 307.0 214 73.4
SMO115G0252 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 5.7e-81 304.7 213 71.8
unitig_62.g23538 Utricularia gibba HOM05D003441 ORTHO05D004516 2.0e-78 296.2 213 71.4
Ciclev10019088m.g Citrus clementina HOM05D003441 ORTHO05D004516 4.2e-76 288.5 211 71.6
Lsat_1_v5_gn_2_120601 Lactuca sativa HOM05D003441 ORTHO05D004516 3.5e-75 285.4 213 70.0
PSO478G5020 Papaver somniferum HOM05D003441 ORTHO05D004516 1.1e-73 280.4 167 86.2
Cfa012202 Carpinus fangiana HOM05D003441 ORTHO05D004516 1.5e-73 280.0 186 78.5
Nitab4.5_0004008g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.3e-72 276.9 214 67.8
PGSC0003DMG400026783 Solanum tuberosum HOM05D003441 ORTHO05D004516 1.6e-72 276.6 213 66.7
Nitab4.5_0002290g0010 Nicotiana tabacum HOM05D003441 ORTHO05D004516 1.1e-71 273.9 214 67.3
Gohir.D11G022333 Gossypium hirsutum HOM05D003441 ORTHO05D004516 1.8e-71 273.1 170 82.9
FAN01G0379 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.7e-64 250.0 205 65.9
SEGI_12778 Sequoiadendron giganteum HOM05D003441 ORTHO05D022097 9.1e-63 244.2 136 88.2
PRCOL_00001151 Prasinoderma coloniale HOM05D003441 ORTHO05D004516 7.7e-62 241.1 291 47.8
CDE12G0607 Ceratophyllum demersum HOM05D003441 ORTHO05D004516 5.0e-61 238.4 215 60.0
Cre06.g297016 Chlamydomonas reinhardtii HOM05D003441 ORTHO05D004516 8.5e-61 237.7 266 50.4
SMO347G0324 Selaginella moellendorffii HOM05D003441 ORTHO05D004516 9.4e-60 234.2 213 58.2
FAN06G4150 Fragaria x ananassa HOM05D003441 ORTHO05D022097 8.8e-58 227.6 150 77.3
FAN03G2549 Fragaria x ananassa HOM05D003441 ORTHO05D004516 2.0e-57 226.5 171 70.2
MCO01G486 Micromonas commoda HOM05D003441 ORTHO05D004516 2.6e-57 226.1 216 54.2
ECA246G1863 Erigeron canadensis HOM05D003441 ORTHO05D004516 1.4e-55 220.3 213 54.9
COL.COLO4_31600 Corchorus olitorius HOM05D003441 ORTHO05D022097 2.2e-53 213.0 111 91.0
FAN13G0171 Fragaria x ananassa HOM05D003441 ORTHO05D004516 2.9e-53 212.6 213 53.5
FAN08G2634 Fragaria x ananassa HOM05D003441 ORTHO05D004516 5.0e-53 211.8 213 53.1
FAN04G2533 Fragaria x ananassa HOM05D003441 ORTHO05D004516 6.5e-53 211.5 213 53.5
arahy.Tifrunner.gnm1.ann1.ZIDD3N Arachis hypogaea HOM05D003441 ORTHO05D004516 5.7e-49 198.4 165 69.7
HPP92_022012 Vanilla planifolia HOM05D003441 ORTHO05D004516 8.2e-48 194.5 130 76.9
arahy.Tifrunner.gnm1.ann1.U109MR Arachis hypogaea HOM05D003441 ORTHO05D004516 2.0e-46 189.9 142 73.2
Haze_26458 Corylus avellana HOM05D003441 ORTHO05D004516 2.1e-43 179.9 258 40.7
BolC6t37163H Brassica oleracea HOM05D003441 ORTHO05D004516 8.0e-43 177.9 127 72.4
CARHR183180 Cardamine hirsuta HOM05D003441 ORTHO05D004516 8.0e-43 177.9 135 70.4
FvH4_5g19430 Fragaria vesca HOM05D003441 ORTHO05D004516 6.8e-42 174.9 213 45.5
CBR_g34305 Chara braunii HOM05D003441 ORTHO05D004516 9.1e-39 164.5 159 54.1
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 7.2e-36 154.8 156 58.3
Cfa023957 Carpinus fangiana HOM05D003441 ORTHO05D004516 1.2e-35 154.1 250 37.6
SMO163G0061 Selaginella moellendorffii HOM05D003441 ORTHO05D022097 4.4e-33 145.6 104 64.4
Glyma.08G323500 Glycine max HOM05D003441 ORTHO05D004516 1.7e-29 133.7 73 87.7
RcHm_v2.0_Chr7g0203931 Rosa chinensis HOM05D003441 ORTHO05D004516 2.9e-29 132.9 213 39.9
Lsat_1_v5_gn_7_95160 Lactuca sativa HOM05D003441 ORTHO05D005003 6.1e-27 125.2 154 48.1
SEGI_39024 Sequoiadendron giganteum HOM05D003441 ORTHO05D004516 1.0e-26 124.4 209 36.8
SEGI_31025 Sequoiadendron giganteum HOM05D003441 ORTHO05D004516 7.0e-23 111.7 72 72.2
Actinidia14580 Actinidia chinensis HOM05D003441 ORTHO05D004516 4.6e-22 109.0 109 58.7
FAN06G0185 Fragaria x ananassa HOM05D003441 ORTHO05D004516 1.5e-17 94.0 108 50.9
FAN01G2616 Fragaria x ananassa HOM05D003441 ORTHO05D022097 2.4e-15 86.7 44 84.1
BolC6t37162H Brassica oleracea HOM05D003441 ORTHO05D022097 8.6e-13 78.2 51 68.6
Lsat_1_v5_gn_1_103221 Lactuca sativa HOM05D002170 ORTHO05D005003 3.3e-12 76.3 49 77.6
Oeu018831.2 Olea europaea HOM05D000241 ORTHO05D001001 7.3e-12 75.1 46 78.3
CDE04G1391 Ceratophyllum demersum HOM05D003441 ORTHO05D129623 6.2e-11 72.0 42 76.2
Dinv38921 Davidia involucrata HOM05D003441 ORTHO05D045117 2.0e-09 67.0 42 73.8
FAN02G3608 Fragaria x ananassa HOM05D003441 ORTHO05D199951 1.3e-08 64.3 52 57.7
arahy.Tifrunner.gnm1.ann1.22APIL Arachis hypogaea HOM05D019049 ORTHO05D087665 1.4e-07 60.8 43 72.1


User provided reference genes

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