Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1631.7 805 100.0
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1562.4 807 94.8
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1560.4 802 94.4
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1539.6 803 93.2
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1441.4 806 87.0
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1429.8 806 86.5
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1428.7 805 85.2
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1410.6 805 84.6
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1404.4 804 83.8
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1397.9 802 83.5
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1390.9 806 82.8
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1384.0 811 83.4
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1377.1 809 83.1
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1376.7 803 82.4
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1375.5 807 83.6
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1372.1 807 81.9
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1371.7 808 82.5
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1369.0 806 83.4
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1369.0 810 82.2
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1367.8 809 82.1
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1367.8 807 82.4
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1360.9 807 82.4
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1360.5 807 81.3
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1360.5 811 82.6
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1359.0 806 83.1
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1358.6 811 81.9
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1358.2 807 82.4
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1356.7 811 81.6
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1355.9 818 80.3
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1347.8 811 81.4
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1345.1 807 80.5
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1343.6 808 80.4
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1342.0 807 80.4
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1341.6 814 80.7
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1335.1 810 81.5
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1334.3 810 81.4
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1334.3 811 79.8
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1331.2 810 81.2
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1331.2 807 80.0
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1330.9 811 81.3
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1327.4 810 80.9
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1322.8 811 79.9
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1322.0 811 79.5
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1310.4 811 78.7
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1308.1 884 73.4
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1307.7 814 78.7
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1300.4 828 78.7
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1294.3 807 78.8
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1291.2 807 77.9
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1290.8 807 79.1
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1288.9 807 77.4
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1286.9 820 76.1
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1285.0 808 77.4
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1281.9 811 77.4
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1281.5 806 77.3
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1278.8 805 77.0
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1278.5 805 76.6
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1277.7 806 77.0
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1277.7 806 77.2
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1275.8 806 76.9
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1275.0 807 77.1
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 805 76.8
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1274.6 809 76.6
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1273.1 806 76.9
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1273.1 806 76.9
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1272.7 807 76.8
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1272.7 807 77.1
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1272.3 806 76.6
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1271.1 807 76.8
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1270.4 807 77.0
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1268.8 797 77.3
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1267.7 810 76.5
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1261.1 806 76.2
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1258.8 808 76.4
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1257.3 806 75.6
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1253.0 806 75.2
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1251.9 806 75.1
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1249.2 806 75.4
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1247.6 807 75.5
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1244.6 807 75.2
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1243.0 811 76.3
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1240.7 807 74.6
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1238.8 801 75.4
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1232.2 862 70.6
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1224.2 808 73.5
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1222.6 783 76.6
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1221.5 813 73.1
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1220.3 867 70.2
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1215.7 805 73.3
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1212.6 856 69.6
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1212.2 805 72.5
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1208.0 810 72.2
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1203.3 810 75.7
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1199.9 806 73.4
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1194.1 807 72.1
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1189.1 810 71.4
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1187.6 765 75.8
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1186.0 806 72.6
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1178.7 811 72.5
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1178.3 912 66.4
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1178.3 813 70.5
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1177.5 804 70.8
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1177.2 822 71.3
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1167.1 809 69.0
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1166.0 963 64.4
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1153.3 964 63.4
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1134.4 783 71.0
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1127.1 808 69.8
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1092.0 813 65.4
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1090.1 822 65.2
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 2.4e-310 1068.5 812 68.8
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 3.2e-310 1068.1 807 66.7
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 7.1e-294 1013.8 800 62.4
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 7.4e-291 1003.8 605 80.5
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 2.2e-279 965.7 806 60.9
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 9.2e-241 837.4 778 58.1
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 1.3e-191 674.1 856 44.9
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 5.1e-191 672.2 381 84.0
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 4.3e-166 589.3 834 41.5
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 9.1e-156 555.1 806 42.7
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 1.9e-153 547.4 858 40.0
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 5.5e-145 519.2 936 34.7
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 1.0e-122 445.3 418 55.5
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 3.8e-122 443.4 353 67.7
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 7.0e-116 422.5 316 65.2
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 7.8e-107 392.5 244 75.4
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 4.4e-102 376.7 235 77.9
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 1.5e-73 282.0 188 73.4
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 3.5e-67 260.8 173 75.7
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 1.2e-59 235.7 303 45.9
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 3.6e-51 207.6 189 59.8
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.7e-45 188.7 141 71.6
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 2.6e-38 164.9 270 41.5
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 3.5e-38 164.5 103 78.6
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 5.9e-38 163.7 90 84.4
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 8.8e-34 149.8 120 66.7
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 2.6e-33 148.3 112 63.4
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 2.6e-33 148.3 97 71.1
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 2.9e-29 134.8 94 72.3
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 4.2e-28 131.0 118 59.3
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 5.5e-28 130.6 181 44.8
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 3.6e-27 127.9 113 51.3
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.8e-26 125.6 89 73.0
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 3.0e-26 124.8 260 33.8
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 8.8e-26 123.2 190 42.6
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 4.5e-22 110.9 172 40.1
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 1.9e-20 105.5 69 73.9
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 2.5e-20 105.1 109 51.4
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 1.6e-19 102.4 59 81.4
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 3.6e-19 101.3 68 73.5
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 2.2e-16 92.0 50 82.0
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 3.1e-15 88.2 155 45.8
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 4.1e-15 87.8 43 86.0
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 5.4e-15 87.4 111 51.4
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 7.2e-12 77.0 129 37.2
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 1.6e-11 75.9 57 68.4
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 8.0e-11 73.6 60 51.7
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 1.7e-08 65.9 68 55.9
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 6.3e-08 63.9 439 22.1
Medtr4g077470 Medicago truncatula HOM05D004364 ORTHO05D258300 1.1e-07 63.2 83 44.6
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 4.1e-07 61.2 76 47.4
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 7.0e-07 60.5 76 47.4
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 9.2e-07 60.1 57 59.6
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 3.5e-06 58.2 54 61.1
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 3.5e-06 58.2 57 56.1


User provided reference genes

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