Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 2199.9 1094 100.0
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1993.4 1097 90.2
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1981.8 1108 89.4
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1873.6 1132 82.3
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 1872.4 1101 84.4
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 1849.7 1106 83.7
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1807.7 1096 82.8
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1729.9 1063 79.5
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1726.8 1080 78.8
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 1626.7 1102 74.8
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 1609.0 1099 73.3
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1607.8 1098 73.5
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1596.3 1102 72.1
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1579.3 1095 72.7
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1577.4 1095 72.5
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1564.7 1099 71.2
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1555.8 1104 71.0
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1548.5 1097 71.3
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1546.6 1104 70.7
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1538.9 1102 70.1
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1538.5 1102 70.1
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1535.4 1101 69.3
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1533.5 1112 69.6
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1529.2 1098 69.8
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1516.1 1100 69.7
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1512.7 1088 70.5
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1511.1 1113 69.1
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1508.8 1095 69.5
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1505.7 1102 68.5
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1503.4 1102 69.1
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1501.1 1101 67.8
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1492.6 1105 68.6
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 0.0e+00 1491.5 868 84.4
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1475.3 1141 65.9
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1473.4 1010 72.7
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1470.7 1098 67.9
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1468.8 1095 67.3
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 1468.4 1096 68.2
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1460.3 1085 67.3
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1458.7 1086 68.5
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1458.0 1132 65.2
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1456.4 1102 67.5
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 1451.0 1102 66.6
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 1450.3 1100 66.7
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 1448.3 1185 64.9
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1443.3 1143 65.3
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 1439.5 1100 66.2
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1434.9 1100 66.8
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1433.7 1097 66.5
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1432.5 1099 66.5
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1431.0 1107 65.9
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1428.7 1099 66.2
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1426.0 1103 66.0
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 1424.8 1060 67.8
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1424.1 1097 65.8
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1423.7 1111 65.5
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1422.1 1032 68.6
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1416.7 1096 65.9
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1410.2 1135 64.4
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1410.2 1091 64.4
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1403.3 1083 66.1
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1395.9 1130 62.8
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1388.2 1096 64.8
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1387.9 1085 64.2
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1385.2 1103 63.3
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 0.0e+00 1375.9 1186 60.9
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1372.8 1096 64.6
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1367.4 1085 65.4
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1366.7 1102 64.0
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1358.6 1108 62.5
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1358.2 1101 62.9
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 0.0e+00 1353.2 1220 57.6
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 0.0e+00 1353.2 866 75.5
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 0.0e+00 1345.5 883 74.6
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1343.6 1122 61.9
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 0.0e+00 1331.6 1091 63.8
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 0.0e+00 1330.5 1113 62.5
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 0.0e+00 1318.9 1100 62.9
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 0.0e+00 1312.0 869 73.5
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1306.2 1101 61.4
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 0.0e+00 1304.7 870 72.5
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 0.0e+00 1282.7 1099 59.4
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 0.0e+00 1278.5 819 75.8
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1277.3 854 72.2
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 0.0e+00 1276.2 846 73.3
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 0.0e+00 1226.8 825 72.1
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 0.0e+00 1225.7 874 69.3
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 0.0e+00 1225.7 1103 58.7
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 0.0e+00 1219.1 1222 54.1
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 0.0e+00 1216.4 945 64.9
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1198.0 1057 60.1
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1197.6 1021 61.7
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1192.2 1030 61.5
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 0.0e+00 1187.9 1101 56.9
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1123.2 1098 55.6
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 0.0e+00 1118.6 1082 54.4
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 0.0e+00 1105.1 708 79.5
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1099.7 877 63.9
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 3.1e-308 1062.0 700 74.4
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 3.5e-275 952.2 902 56.1
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 4.7e-264 915.2 990 49.5
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 8.0e-264 914.4 1115 46.0
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 1.2e-262 910.6 641 70.0
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 9.5e-257 891.0 613 71.0
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 2.7e-251 872.8 988 47.3
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 1.5e-214 750.7 959 44.5
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 9.3e-204 714.9 499 71.5
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 5.1e-202 709.1 405 89.1
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 6.5e-197 692.2 536 67.2
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 4.4e-153 546.6 473 61.1
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 4.4e-145 520.0 1082 34.0
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 4.6e-134 483.4 405 63.5
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 6.8e-122 443.0 319 68.7
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 3.2e-119 434.1 389 56.6
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 9.0e-90 336.3 291 61.2
Lalb_Chr10g0101331 Lupinus albus HOM05D001849 ORTHO05D004689 4.1e-82 310.8 209 75.6
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 9.0e-74 283.1 297 51.9
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.7e-72 278.9 203 70.0
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 3.0e-69 268.1 161 83.2
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.8e-66 258.8 233 60.1
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 5.3e-58 230.7 174 67.2
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.1e-55 223.0 182 64.8
GSVIVG01016718001 Vitis vinifera HOM05D001849 ORTHO05D004689 1.2e-54 219.5 216 56.0
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.7e-51 208.0 195 60.0
Cc04_g01050 Coffea canephora HOM05D001849 ORTHO05D004689 8.0e-46 190.3 208 53.4
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 8.0e-46 190.3 144 65.3
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 2.1e-38 165.6 166 51.8
CAN.G1243.8 Capsicum annuum HOM05D001849 ORTHO05D004689 4.7e-38 164.5 181 53.0
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 1.2e-36 159.8 162 50.6
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 2.4e-34 152.1 92 76.1
Duzib235G0009 Durio zibethinus HOM05D001849 ORTHO05D004689 5.9e-33 147.5 174 48.3
CDE07G1706 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 3.8e-32 144.8 202 46.5
Cpa.g.sc169.33 Carica papaya HOM05D001849 ORTHO05D004689 1.9e-31 142.5 174 48.9
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 5.6e-31 141.0 100 64.0
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 7.3e-31 140.6 104 61.5
TAR730G0002 Trochodendron aralioides HOM05D001849 ORTHO05D004689 2.3e-29 135.6 154 49.4
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 5.7e-28 131.0 95 69.5
Hund18673 Selenicereus undatus HOM05D001849 ORTHO05D004689 5.7e-28 131.0 174 47.7
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 3.7e-27 128.3 89 67.4
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 7.0e-26 124.0 93 62.4
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 2.0e-25 122.5 106 60.4
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 3.3e-23 115.2 89 62.9
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 9.5e-23 113.6 171 39.8
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 9.8e-20 103.6 100 51.0
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 4.9e-19 101.3 431 25.8
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 4.6e-17 94.7 93 51.6
Atru.chr12.2396 Acer truncatum HOM05D001849 ORTHO05D004689 1.0e-16 93.6 140 45.0
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 3.0e-16 92.0 73 60.3
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 6.6e-16 90.9 666 24.5
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 2.6e-12 79.0 207 30.9
Hma1.2p1_0225F.1_g094790 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 7.1e-10 70.9 124 37.9
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 1.6e-09 69.7 78 51.3
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 6.0e-09 67.8 65 52.3
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 6.0e-09 67.8 52 63.5
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 7.8e-09 67.4 71 52.1
Atru.chr12.2376 Acer truncatum HOM05D001849 ORTHO05D004689 6.6e-08 64.3 106 39.6
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 6.6e-08 64.3 53 60.4
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.1e-07 63.5 55 58.2
SMO304G0058 Selaginella moellendorffii HOM05D042764 ORTHO05D004689 5.6e-07 61.2 206 27.2
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 7.3e-07 60.8 53 58.5
SMO304G0098 Selaginella moellendorffii HOM05D027722 ORTHO05D004689 7.3e-07 60.8 225 28.9
C01p30760 Brassica napus HOM05D001849 ORTHO05D042635 9.5e-07 60.5 37 81.1
SMO304G0054 Selaginella moellendorffii HOM05D027722 ORTHO05D004689 1.6e-06 59.7 225 28.9
Hma1.2p1_0436F.1_g152830 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 4.7e-06 58.2 69 47.8


User provided reference genes

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