Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 0.0e+00 1314.3 655 100.0
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 1.0e-290 1003.0 656 77.4
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 2.5e-273 945.3 642 75.2
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 2.2e-269 932.2 683 70.4
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 2.8e-256 888.6 658 69.6
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.9e-252 875.9 717 66.2
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 1.2e-233 813.5 716 61.2
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 4.7e-227 791.6 721 59.4
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 8.8e-226 787.3 722 59.0
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 2.2e-224 782.7 709 60.1
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.1e-203 713.0 737 54.1
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 8.1e-203 711.1 737 53.9
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 2.2e-200 703.0 737 53.3
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 3.9e-197 692.2 703 55.8
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.9e-183 646.7 726 50.6
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 5.4e-183 645.2 733 50.5
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 3.5e-182 642.5 733 50.2
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 4.8e-179 632.1 656 52.1
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 1.2e-174 617.5 668 53.6
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 5.3e-170 602.1 590 53.7
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 5.8e-169 598.6 709 48.7
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 7.6e-169 598.2 724 46.0
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 7.6e-169 598.2 692 49.7
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 3.8e-168 595.9 716 47.2
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 1.6e-166 590.5 851 43.6
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 2.7e-166 589.7 736 46.5
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 8.7e-165 584.7 726 45.9
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 1.5e-164 583.9 732 44.9
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 2.5e-164 583.2 717 45.0
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 8.1e-163 578.2 722 46.3
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 3.4e-161 572.8 731 46.1
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.1e-159 567.8 711 45.3
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 2.5e-159 566.6 720 45.4
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 4.2e-159 565.8 720 45.4
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 6.0e-158 562.0 690 46.8
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.3e-157 560.8 713 44.7
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 3.0e-157 559.7 731 46.2
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 3.0e-157 559.7 728 45.5
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.1e-156 557.8 720 44.7
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 7.4e-156 555.1 731 45.8
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 2.8e-155 553.1 706 45.3
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 4.8e-155 552.4 731 45.7
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 2.0e-153 547.0 746 43.2
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 1.3e-152 544.3 730 43.7
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 1.7e-152 543.9 718 43.6
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.7e-152 543.9 707 44.7
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 1.4e-151 540.8 656 46.6
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 2.5e-151 540.0 670 46.3
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 7.2e-151 538.5 724 45.4
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 2.1e-150 537.0 721 44.2
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 4.6e-150 535.8 603 49.6
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 3.0e-149 533.1 673 46.8
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 8.7e-149 531.6 700 43.9
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.3e-148 529.6 721 43.0
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 5.3e-146 522.3 683 44.8
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 9.0e-146 521.5 674 45.3
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 3.4e-145 519.6 708 44.1
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 2.2e-144 516.9 699 43.3
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.4e-143 514.2 670 44.9
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.2e-142 511.1 692 45.5
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.6e-142 510.8 669 44.1
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 2.7e-142 510.0 670 44.6
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 7.9e-142 508.4 679 44.3
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.3e-141 506.9 675 43.4
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 2.3e-141 506.9 685 44.4
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 2.5e-140 503.4 663 45.1
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 5.7e-140 502.3 719 42.0
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.3e-139 501.1 676 42.0
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 5.3e-138 495.7 719 41.4
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.8e-136 489.6 720 40.7
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.6e-134 484.2 664 43.2
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 7.9e-134 481.9 667 42.6
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.4e-133 481.1 680 42.4
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 1.4e-133 481.1 658 43.6
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.5e-132 477.6 668 42.5
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 3.3e-132 476.5 719 40.8
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 3.3e-132 476.5 658 42.9
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 3.1e-130 469.9 666 43.2
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 5.0e-128 462.6 687 41.8
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 8.5e-128 461.8 715 39.7
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 4.7e-126 456.1 763 38.0
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 2.0e-124 450.7 697 40.0
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 9.7e-124 448.4 527 49.1
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.7e-123 447.6 693 39.8
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 3.7e-123 446.4 643 40.4
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 6.3e-123 445.7 433 52.4
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 8.2e-123 445.3 703 38.5
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.0e-121 440.7 713 38.8
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.3e-120 438.0 683 40.8
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 3.8e-120 436.4 663 40.7
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 1.1e-119 434.9 544 46.5
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 3.2e-119 433.3 579 43.5
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 7.2e-119 432.2 531 47.8
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 4.7e-118 429.5 693 40.3
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 1.8e-117 427.6 679 39.6
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 1.5e-116 424.5 680 39.0
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 1.3e-115 421.4 654 39.0
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 4.8e-115 419.5 681 38.9
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 8.3e-115 418.7 663 39.4
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 3.1e-114 416.8 677 38.8
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 5.4e-114 416.0 691 38.8
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 5.0e-112 409.5 415 50.1
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.8e-109 401.0 694 37.9
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 1.3e-107 394.8 640 38.6
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 8.3e-107 392.1 575 40.7
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.3e-104 384.8 644 38.8
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.8e-101 374.4 619 38.8
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.2e-100 371.7 491 43.6
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 2.9e-99 367.1 542 41.5
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 8.3e-99 365.5 447 47.9
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 8.3e-99 365.5 535 41.7
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.9e-95 354.4 362 52.8
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 4.7e-94 349.7 720 33.1
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 3.4e-92 343.6 533 37.7
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 7.5e-92 342.4 716 33.2
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.7e-89 334.0 301 55.1
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 8.1e-86 322.4 389 46.8
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.5e-81 307.0 465 39.6
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 2.4e-74 284.3 687 31.6
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.3e-72 278.5 356 42.4
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.9e-71 274.6 300 47.0
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 7.6e-68 262.7 202 68.3
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 2.4e-66 257.7 679 30.6
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 5.1e-64 250.0 366 42.9
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 9.0e-61 239.2 508 33.1
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 7.1e-58 229.6 363 42.1
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 1.1e-55 222.2 619 28.9
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 4.8e-54 216.9 599 28.2
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 2.4e-50 204.5 166 57.2
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 1.3e-43 182.2 140 54.3
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.1e-39 169.1 238 40.8
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 2.9e-35 154.5 239 38.9
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 2.9e-35 154.5 459 27.0
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.5e-35 153.3 555 26.5
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 5.5e-34 150.2 274 32.8
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 1.1e-31 142.5 464 27.2
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.2e-30 138.3 248 35.9
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 4.8e-30 137.1 104 61.5
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 1.7e-27 128.6 104 59.6
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.9e-27 127.9 184 41.3
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 6.1e-25 120.2 153 39.2
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.3e-21 107.1 110 49.1
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.3e-19 102.4 263 31.6
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 8.5e-19 99.8 278 28.1
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 5.7e-15 87.0 187 31.0
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 2.8e-14 84.7 129 36.4
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 9.1e-13 79.7 142 36.6
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 1.3e-11 75.9 163 35.6
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 3.8e-11 74.3 207 30.9
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 3.8e-11 74.3 50 60.0
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 3.6e-09 67.8 69 52.2
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 4.7e-09 67.4 80 43.8
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 9.7e-07 59.7 194 27.3
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 6.3e-06 57.0 67 47.8
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 8.2e-06 56.6 116 31.9


User provided reference genes

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