Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26879 Trifolium pratense HOM05D004344 ORTHO05D006026 6.5e-120 434.1 202 100.0
TPR.G16152 Trifolium pratense HOM05D004344 ORTHO05D006026 3.7e-115 418.3 202 95.5
Ca_24759_v3 Cicer arietinum L. HOM05D004344 ORTHO05D006026 1.5e-113 412.9 202 94.1
Medtr5g017070 Medicago truncatula HOM05D004344 ORTHO05D006026 4.5e-113 411.4 202 94.6
Psat2g166640 Pisum sativum HOM05D004344 ORTHO05D006026 2.1e-110 402.5 202 91.6
Lj3g0019632 Lotus japonicus HOM05D004344 ORTHO05D006026 3.2e-103 378.6 202 84.7
Phvul.002G017900 Phaseolus vulgaris HOM05D004344 ORTHO05D006026 4.8e-99 364.8 203 83.7
Lalb_Chr09g0323231 Lupinus albus HOM05D004344 ORTHO05D006026 1.6e-97 359.8 201 79.6
Lj2g0014817 Lotus japonicus HOM05D004344 ORTHO05D006026 1.7e-96 356.3 200 82.5
Glyma.01G187400 Glycine max HOM05D004344 ORTHO05D006026 3.8e-96 355.1 204 80.4
arahy.Tifrunner.gnm1.ann1.KW6QS2 Arachis hypogaea HOM05D004344 ORTHO05D006026 1.1e-95 353.6 202 78.7
arahy.Tifrunner.gnm1.ann1.EE0YL2 Arachis hypogaea HOM05D004344 ORTHO05D006026 3.6e-94 348.6 202 77.7
VMungo1215G1933 Vigna mungo HOM05D004344 ORTHO05D006026 1.4e-93 346.7 203 79.8
Cpa.g.sc55.134 Carica papaya HOM05D004344 ORTHO05D006026 1.2e-89 333.6 203 72.4
Thecc.01G058600 Theobroma cacao HOM05D004344 ORTHO05D006026 2.3e-88 329.3 203 72.4
Haze_15381 Corylus avellana HOM05D004344 ORTHO05D006026 8.6e-88 327.4 203 71.9
CiPaw.01G016700 Carya illinoinensis HOM05D004344 ORTHO05D006026 1.0e-85 320.5 202 71.8
RcHm_v2.0_Chr2g0117021 Rosa chinensis HOM05D004344 ORTHO05D006026 1.0e-85 320.5 202 72.3
Duzib147G0141 Durio zibethinus HOM05D004344 ORTHO05D006026 4.0e-85 318.5 203 71.4
QL06p040994 Quercus lobata HOM05D004344 ORTHO05D006026 6.8e-85 317.8 202 69.8
VMungo0464G2085 Vigna mungo HOM05D004344 ORTHO05D006026 8.9e-85 317.4 203 72.9
Dinv26836 Davidia involucrata HOM05D004344 ORTHO05D006026 2.0e-84 316.2 203 70.0
GSVIVG01022113001 Vitis vinifera HOM05D004344 ORTHO05D006026 5.7e-84 314.7 203 71.4
Cfa004033 Carpinus fangiana HOM05D004344 ORTHO05D006026 7.5e-84 314.3 203 70.0
vmacro05947 Vaccinium macrocarpon HOM05D004344 ORTHO05D006026 9.8e-84 313.9 203 70.9
Rhsim10G0115900 Rhododendron simsii HOM05D004344 ORTHO05D006026 2.4e-82 309.3 203 70.4
TAR376G0722 Trochodendron aralioides HOM05D004344 ORTHO05D006026 3.2e-82 308.9 204 71.6
Hma1.2p1_0017F.1_g011490 Hydrangea macrophylla HOM05D004344 ORTHO05D006026 4.1e-82 308.5 204 68.6
Sabra07G0040300 Salix brachista HOM05D004344 ORTHO05D006026 7.0e-82 307.8 202 69.8
CANSAT01G0155 Cannabis sativa HOM05D004344 ORTHO05D006026 1.2e-81 307.0 203 68.0
Potri.007G045300 Populus trichocarpa HOM05D004344 ORTHO05D006026 1.2e-81 307.0 204 69.1
FvH4_1g22730 Fragaria vesca HOM05D004344 ORTHO05D006026 1.6e-81 306.6 202 69.3
CSS0049451 Camellia sinensis var. sinensis HOM05D004344 ORTHO05D006026 2.0e-81 306.2 204 70.6
Gorai.007G214600 Gossypium raimondii HOM05D004344 ORTHO05D006026 4.6e-81 305.1 203 68.5
Prupe.7G131600 Prunus persica HOM05D004344 ORTHO05D006026 4.6e-81 305.1 203 68.5
Gohir.D11G200300 Gossypium hirsutum HOM05D004344 ORTHO05D006026 5.9e-81 304.7 203 68.5
FAN19G2019 Fragaria x ananassa HOM05D004344 ORTHO05D006026 1.0e-80 303.9 200 69.0
Ciclev10024699m.g Citrus clementina HOM05D004344 ORTHO05D006026 3.0e-80 302.4 203 68.5
FAN26G0646 Fragaria x ananassa HOM05D004344 ORTHO05D006026 3.0e-80 302.4 202 68.3
Gohir.A11G193200 Gossypium hirsutum HOM05D004344 ORTHO05D006026 3.0e-80 302.4 203 68.5
DCAR_025744 Daucus carota HOM05D004344 ORTHO05D006026 6.6e-80 301.2 202 66.3
Oeu020531.3 Olea europaea HOM05D004344 ORTHO05D006026 6.6e-80 301.2 203 66.0
FAN23G1634 Fragaria x ananassa HOM05D004344 ORTHO05D006026 4.3e-79 298.5 212 66.0
Actinidia12045 Actinidia chinensis HOM05D004344 ORTHO05D006026 8.0e-78 294.3 200 65.0
TWI09G1157 Tripterygium wilfordii HOM05D004344 ORTHO05D006026 8.0e-78 294.3 202 65.3
AUR62003893 Chenopodium quinoa HOM05D004344 ORTHO05D006026 1.0e-77 293.9 201 65.7
Manes.13G122900 Manihot esculenta HOM05D004344 ORTHO05D006026 1.0e-77 293.9 202 66.8
Nitab4.5_0003519g0040 Nicotiana tabacum HOM05D004344 ORTHO05D006026 2.3e-77 292.7 202 61.4
MSTRG.23740 Avicennia marina HOM05D004344 ORTHO05D006026 3.1e-77 292.4 203 64.0
Eucgr.H01686 Eucalyptus grandis HOM05D004344 ORTHO05D006026 5.2e-77 291.6 198 63.6
SGA_v2.0_scaffold15G07321 Striga asiatica HOM05D004344 ORTHO05D006026 4.4e-76 288.5 203 65.5
MD15G1285400 Malus domestica HOM05D004344 ORTHO05D006026 1.3e-75 287.0 202 63.9
AUR62001915 Chenopodium quinoa HOM05D004344 ORTHO05D006026 1.7e-75 286.6 203 64.5
Solyc02g093300.3 Solanum lycopersicum HOM05D004344 ORTHO05D006026 2.2e-75 286.2 202 60.9
Sopen02g037860 Solanum pennellii HOM05D004344 ORTHO05D006026 3.7e-75 285.4 202 60.4
Cc07_g06110 Coffea canephora HOM05D004344 ORTHO05D006026 1.4e-74 283.5 203 62.6
Nitab4.5_0002029g0030 Nicotiana tabacum HOM05D004344 ORTHO05D006026 1.9e-74 283.1 207 60.9
Ah.03g145340 Amaranthus hybridus HOM05D004344 ORTHO05D006026 3.2e-74 282.3 202 61.9
MD02G1174400 Malus domestica HOM05D004344 ORTHO05D006026 7.0e-74 281.2 203 62.1
Peaxi162Scf00450g00127 Petunia axillaris HOM05D004344 ORTHO05D006026 1.2e-73 280.4 202 61.4
CsaV3_2G016500 Cucumis sativus L. HOM05D004344 ORTHO05D006026 2.7e-73 279.3 203 62.1
SGA_v2.0_scaffold46G17397 Striga asiatica HOM05D004344 ORTHO05D006026 3.5e-73 278.9 203 63.1
Migut.H00422 Erythranthe guttata HOM05D004344 ORTHO05D006026 1.3e-72 276.9 203 61.6
MELO3C020860.2 Cucumis melo HOM05D004344 ORTHO05D006026 6.6e-72 274.6 203 60.1
Sp2g29580 Schrenkiella parvula HOM05D004344 ORTHO05D006026 6.6e-72 274.6 199 62.3
CAN.G370.48 Capsicum annuum HOM05D004344 ORTHO05D006026 8.6e-72 274.2 203 59.1
Sed0002898 Sechium edule HOM05D004344 ORTHO05D006026 8.6e-72 274.2 204 62.3
ClCG02G012370 Citrullus lanatus HOM05D004344 ORTHO05D006026 7.3e-71 271.2 203 60.6
Thhalv10003515m.g Eutrema salsugineum HOM05D004344 ORTHO05D006026 2.1e-70 269.6 199 60.3
AT5G67100 Arabidopsis thaliana HOM05D004344 ORTHO05D006026 3.6e-70 268.9 199 59.8
PGR102G1820 Punica granatum HOM05D004344 ORTHO05D006026 3.6e-70 268.9 199 59.3
BcaC06g34790 Brassica carinata HOM05D004344 ORTHO05D006026 4.7e-70 268.5 200 60.0
AL8G44260 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 8.1e-70 267.7 199 59.3
unitig_899.g14946 Utricularia gibba HOM05D004344 ORTHO05D006026 1.1e-69 267.3 200 58.0
A07p16860 Brassica napus HOM05D004344 ORTHO05D006026 5.2e-69 265.0 199 61.3
BraA07t29411Z Brassica rapa HOM05D004344 ORTHO05D006026 5.2e-69 265.0 199 61.3
Aa31LG1G15620 Aethionema arabicum HOM05D004344 ORTHO05D006026 6.8e-69 264.6 200 58.0
Carub.0008s2741 Capsella rubella HOM05D004344 ORTHO05D006026 6.8e-69 264.6 199 58.8
CARHR280550 Cardamine hirsuta HOM05D004344 ORTHO05D006026 8.9e-69 264.2 199 59.8
Aqoxy7G02851 Aquilegia oxysepala HOM05D004344 ORTHO05D006026 1.2e-68 263.8 203 57.6
ATR0584G066 Amborella trichopoda HOM05D004344 ORTHO05D006026 2.6e-68 262.7 202 59.9
BolC7t42987H Brassica oleracea HOM05D004344 ORTHO05D006026 2.6e-68 262.7 199 60.3
CARHR066690 Cardamine hirsuta HOM05D004344 ORTHO05D006026 2.6e-68 262.7 200 60.0
Carub.0008s0466 Capsella rubella HOM05D004344 ORTHO05D006026 3.4e-68 262.3 199 60.3
Os01g0868300 Oryza sativa ssp. japonica HOM05D004344 ORTHO05D006026 4.4e-68 261.9 205 57.1
Zm00001eb146610 Zea mays HOM05D004344 ORTHO05D006026 5.8e-68 261.5 205 58.0
C07p24670 Brassica napus HOM05D004344 ORTHO05D006026 9.8e-68 260.8 199 59.8
PSO675G1845 Papaver somniferum HOM05D004344 ORTHO05D006026 2.2e-67 259.6 205 55.6
PSO541G2052 Papaver somniferum HOM05D004344 ORTHO05D006026 2.9e-67 259.2 206 56.8
THA.LOC104827210 Tarenaya hassleriana HOM05D004344 ORTHO05D006026 3.7e-67 258.8 199 57.8
AL8G20700 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 7.1e-66 254.6 200 58.5
AL8G22110 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 2.1e-65 253.1 201 58.7
ECA238G4385 Erigeron canadensis HOM05D004344 ORTHO05D006026 7.8e-65 251.1 197 57.9
BolC2t11212H Brassica oleracea HOM05D004344 ORTHO05D006026 1.0e-64 250.8 198 57.6
Lj7C70T9 Lonicera japonica HOM05D004344 ORTHO05D006026 1.0e-64 250.8 203 59.1
BcaC03g17194 Brassica carinata HOM05D004344 ORTHO05D006026 1.3e-64 250.4 198 57.6
C02p51210 Brassica napus HOM05D004344 ORTHO05D006026 1.3e-64 250.4 198 57.6
BraA02t08352Z Brassica rapa HOM05D004344 ORTHO05D006026 1.7e-64 250.0 198 57.6
HanXRQChr14g0449061 Helianthus annuus HOM05D004344 ORTHO05D006026 1.7e-64 250.0 202 55.9
HPP92_025047 Vanilla planifolia HOM05D004344 ORTHO05D006026 5.1e-64 248.4 204 54.4
AL74U10010 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 3.3e-63 245.7 200 57.0
HPP92_025019 Vanilla planifolia HOM05D004344 ORTHO05D006026 4.3e-63 245.4 204 53.9
Lsat_1_v5_gn_2_84960 Lactuca sativa HOM05D004344 ORTHO05D006026 8.1e-62 241.1 204 54.4
SEGI_29171 Sequoiadendron giganteum HOM05D004344 ORTHO05D006026 6.8e-61 238.0 212 52.4
Hund16343 Selenicereus undatus HOM05D004344 ORTHO05D006026 1.3e-59 233.8 201 54.7
CDE04G1072 Ceratophyllum demersum HOM05D004344 ORTHO05D006026 9.2e-58 227.6 202 52.0
SEGI_21985 Sequoiadendron giganteum HOM05D004344 ORTHO05D006026 1.7e-56 223.4 212 48.6
Dinv29999 Davidia involucrata HOM05D004344 ORTHO05D006026 7.3e-55 218.0 155 64.5
PSO541G3830 Papaver somniferum HOM05D004344 ORTHO05D006026 2.0e-52 209.9 174 51.1
Mapoly0074s0003 Marchantia polymorpha HOM05D004344 ORTHO05D006026 4.4e-44 182.2 202 42.6
Nn5g30338 Nelumbo nucifera HOM05D004344 ORTHO05D006026 9.3e-42 174.5 129 61.2
Pp3c1_21120 Physcomitrium patens HOM05D004344 ORTHO05D006026 7.9e-41 171.4 202 41.1
SHI09536 Sapria himalayana HOM05D004344 ORTHO05D006026 3.0e-40 169.5 140 56.4
BcaC06g34793 Brassica carinata HOM05D004344 ORTHO05D006026 1.9e-39 166.8 128 59.4
A02p33280 Brassica napus HOM05D004344 ORTHO05D006026 2.4e-37 159.8 127 57.5
arahy.Tifrunner.gnm1.ann1.7M3CIR Arachis hypogaea HOM05D004344 ORTHO05D006026 7.9e-33 144.8 88 72.7
SMO144G0147 Selaginella moellendorffii HOM05D004344 ORTHO05D006026 1.3e-32 144.1 208 36.5
CBR_g30810 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-28 129.8 211 35.1
Lsat_1_v5_gn_1_82200 Lactuca sativa HOM05D002111 ORTHO05D002160 4.5e-28 129.0 163 41.7
Sc03g0001670 Simmondsia chinensis HOM05D004344 ORTHO05D006026 7.9e-25 118.2 89 59.6
AagrBONN_evm.TU.Sc2ySwM_344.2703__2704 Anthoceros agrestis HOM05D004344 ORTHO05D006026 1.9e-23 113.6 128 45.3
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 5.1e-16 89.0 85 47.1
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 2.2e-14 83.6 104 43.3
SHI09538 Sapria himalayana HOM05D004344 ORTHO05D364729 6.3e-14 82.0 70 51.4
MCO16G420 Micromonas commoda HOM05D004344 ORTHO05D006026 9.4e-10 68.2 137 32.8


User provided reference genes

Program Settings