Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25338 Trifolium pratense HOM05D004863 ORTHO05D005802 1.9e-209 732.3 368 100.0
Psat2g030120 Pisum sativum HOM05D004863 ORTHO05D005802 2.1e-128 463.0 371 67.4
TPR.G38454 Trifolium pratense HOM05D004863 ORTHO05D005802 1.1e-121 440.7 354 69.2
Ca_05983_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 1.4e-116 423.7 373 64.1
Ca_05985_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 1.4e-116 423.7 373 64.1
Medtr5g083120 Medicago truncatula HOM05D004863 ORTHO05D005802 1.5e-102 377.1 380 58.7
Medtr5g081260 Medicago truncatula HOM05D004863 ORTHO05D005802 1.0e-90 337.8 356 58.7
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 7.5e-89 331.6 386 52.6
Glyma.14G057200 Glycine max HOM05D004863 ORTHO05D005802 3.8e-85 319.3 375 52.3
Phvul.008G221700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 5.4e-79 298.9 373 49.9
Lalb_Chr10g0105231 Lupinus albus HOM05D004863 ORTHO05D005802 4.5e-78 295.8 343 53.4
VMungo0647G0293 Vigna mungo HOM05D004863 ORTHO05D005802 7.7e-78 295.0 356 50.0
Phvul.007G217900 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 4.7e-75 285.8 374 49.7
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 3.1e-71 273.1 385 45.7
Phvul.001G192700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 3.1e-71 273.1 358 48.0
Potri.008G072300 Populus trichocarpa HOM05D004863 ORTHO05D005802 7.0e-71 271.9 395 45.6
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 3.6e-67 259.6 391 46.5
arahy.Tifrunner.gnm1.ann1.U87T4F Arachis hypogaea HOM05D004863 ORTHO05D005802 8.0e-67 258.5 385 45.7
CiPaw.01G301000 Carya illinoinensis HOM05D004863 ORTHO05D005802 1.4e-66 257.7 391 44.8
Lj4g0013997 Lotus japonicus HOM05D004863 ORTHO05D005802 3.1e-66 256.5 382 46.1
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 1.2e-65 254.6 386 43.8
arahy.Tifrunner.gnm1.ann1.SVWC8K Arachis hypogaea HOM05D004863 ORTHO05D005802 3.4e-65 253.1 393 44.3
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 4.4e-65 252.7 390 43.6
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 2.7e-62 243.4 382 44.0
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 2.7e-62 243.4 382 44.0
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 7.8e-62 241.9 388 43.3
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 5.0e-61 239.2 399 42.9
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 1.9e-60 237.3 387 42.6
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 9.5e-60 235.0 397 43.1
Eucgr.G03083 Eucalyptus grandis HOM05D004863 ORTHO05D005802 6.2e-59 232.3 369 44.7
Dinv21763 Davidia involucrata HOM05D004863 ORTHO05D005802 1.8e-58 230.7 426 40.4
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 5.2e-58 229.2 403 42.7
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 6.8e-58 228.8 400 40.2
MSTRG.8933 Avicennia marina HOM05D004863 ORTHO05D005802 1.7e-56 224.2 400 41.0
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 4.1e-55 219.5 359 42.1
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 5.4e-55 219.2 391 41.4
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 7.0e-55 218.8 358 42.7
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 7.0e-55 218.8 394 39.8
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 1.7e-53 214.2 384 41.1
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 2.3e-53 213.8 395 40.8
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 4.3e-52 209.5 370 40.3
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 2.8e-51 206.8 401 38.9
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 1.1e-50 204.9 401 39.4
GSVIVG01032766001 Vitis vinifera HOM05D004863 ORTHO05D005802 1.8e-50 204.1 397 38.8
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 4.0e-50 203.0 417 38.1
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis HOM05D004863 ORTHO05D005802 5.8e-49 199.1 367 39.5
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 5.8e-49 199.1 367 39.5
Aqoxy5G04144 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 1.7e-48 197.6 386 38.3
Aqoxy1G01634 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 2.9e-48 196.8 386 38.1
CsaV3_5G010370 Cucumis sativus L. HOM05D004863 ORTHO05D005802 4.9e-48 196.1 394 38.1
Glyma.02G263700 Glycine max HOM05D004863 ORTHO05D005802 4.9e-48 196.1 282 47.9
FAN13G2483 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.1e-47 194.9 382 38.5
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 1.4e-47 194.5 394 37.6
Duzib128G0112 Durio zibethinus HOM05D004863 ORTHO05D005802 1.9e-47 194.1 388 38.1
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 7.1e-47 192.2 369 38.5
Cpa.g.sc19.141 Carica papaya HOM05D004863 ORTHO05D005802 9.2e-47 191.8 398 37.4
Sc10g0002560 Simmondsia chinensis HOM05D004863 ORTHO05D005802 9.2e-47 191.8 401 38.9
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 6.0e-46 189.1 376 38.3
THA.LOC104816534 Tarenaya hassleriana HOM05D004863 ORTHO05D005802 6.0e-46 189.1 375 38.7
Nitab4.5_0012306g0020 Nicotiana tabacum HOM05D004863 ORTHO05D005802 1.1e-44 184.9 409 36.7
EL10Ac2g04883 Beta vulgaris HOM05D004863 ORTHO05D005802 1.9e-44 184.1 400 38.2
ECA233G5735 Erigeron canadensis HOM05D000718 ORTHO05D005802 3.3e-44 183.3 402 35.8
COL.COLO4_25779 Corchorus olitorius HOM05D007663 ORTHO05D009455 4.3e-44 183.0 382 36.6
FAN18G0869 Fragaria x ananassa HOM05D004863 ORTHO05D005802 9.5e-44 181.8 390 36.9
TAR357G0004 Trochodendron aralioides HOM05D004863 ORTHO05D005802 1.6e-43 181.0 387 36.7
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 4.7e-43 179.5 387 36.7
Ah.16g108070 Amaranthus hybridus HOM05D004863 ORTHO05D005802 1.4e-42 177.9 406 37.7
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 1.8e-42 177.6 421 35.6
AUR62012290 Chenopodium quinoa HOM05D004863 ORTHO05D005802 1.2e-41 174.9 376 38.0
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 9.9e-41 171.8 321 40.2
RcHm_v2.0_Chr7g0236461 Rosa chinensis HOM05D004863 ORTHO05D005802 2.9e-40 170.2 329 38.6
RcHm_v2.0_Chr7g0236501 Rosa chinensis HOM05D004863 ORTHO05D005802 2.9e-40 170.2 329 38.6
FAN08G0290 Fragaria x ananassa HOM05D004863 ORTHO05D005802 3.8e-40 169.9 370 37.6
Nn2g10959 Nelumbo nucifera HOM05D004863 ORTHO05D005802 6.4e-40 169.1 391 36.3
Ah.16g103820 Amaranthus hybridus HOM05D004863 ORTHO05D005802 1.4e-39 167.9 409 36.2
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 4.2e-39 166.4 319 38.9
EL10Ac8g19300 Beta vulgaris HOM05D004863 ORTHO05D005802 2.5e-36 157.1 446 33.2
ECA234G2111 Erigeron canadensis HOM05D004863 ORTHO05D005802 2.5e-36 157.1 386 33.2
Gohir.D04G070101 Gossypium hirsutum HOM05D004863 ORTHO05D005802 2.5e-36 157.1 374 35.8
Gorai.012G078600 Gossypium raimondii HOM05D004863 ORTHO05D005802 5.6e-36 156.0 371 35.8
AUR62022930 Chenopodium quinoa HOM05D004863 ORTHO05D005802 4.7e-35 152.9 321 40.8
Gohir.A05G331501 Gossypium hirsutum HOM05D004863 ORTHO05D005802 1.1e-34 151.8 370 34.3
Aa31LG11G6560 Aethionema arabicum HOM05D004863 ORTHO05D005802 9.0e-34 148.7 406 32.5
PSO170G5836 Papaver somniferum HOM05D004863 ORTHO05D005802 2.6e-33 147.1 417 33.6
AT5G05490 Arabidopsis thaliana HOM05D004863 ORTHO05D005802 5.8e-33 146.0 374 36.6
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 5.8e-33 146.0 368 32.6
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 5.8e-33 146.0 369 35.2
PSO017G6293 Papaver somniferum HOM05D004863 ORTHO05D005802 7.6e-33 145.6 417 32.9
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 9.9e-33 145.2 367 33.8
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 6.4e-32 142.5 369 32.8
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 1.1e-31 141.7 365 34.0
AL6G15380 Arabidopsis lyrata HOM05D004863 ORTHO05D005802 1.6e-30 137.9 368 35.1
RcHm_v2.0_Chr0c11g0499581 Rosa chinensis HOM05D004863 ORTHO05D005802 2.7e-30 137.1 183 46.4
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 1.7e-29 134.4 377 33.2
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 1.7e-29 134.4 377 33.2
Carub.0006s0439 Capsella rubella HOM05D004863 ORTHO05D005802 1.7e-29 134.4 382 33.5
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 3.3e-28 130.2 369 32.0
TAR362G0045 Trochodendron aralioides HOM05D004863 ORTHO05D005802 5.6e-28 129.4 168 48.8
unitig_46.g18609 Utricularia gibba HOM05D004863 ORTHO05D005802 5.3e-26 122.9 168 47.0
CAN.G1001.50 Capsicum annuum HOM05D004863 ORTHO05D005802 9.0e-26 122.1 145 51.0
MBI03_g10782_MAGBIO Magnolia biondii HOM05D004863 ORTHO05D005802 9.0e-26 122.1 361 33.0
Solyc06g074870.3 Solanum lycopersicum HOM05D004863 ORTHO05D005802 2.2e-24 117.5 311 33.1
CDE09G0264 Ceratophyllum demersum HOM05D004863 ORTHO05D005802 1.2e-22 111.7 170 47.1
Actinidia00966 Actinidia chinensis HOM05D004863 ORTHO05D005802 3.5e-22 110.2 259 35.5
HPP92_003692 Vanilla planifolia HOM05D004863 ORTHO05D005802 1.0e-21 108.6 368 32.6
DCAR_011837 Daucus carota HOM05D004863 ORTHO05D001062 3.0e-21 107.1 285 34.0
Peaxi162Scf00114g01014 Petunia axillaris HOM05D004863 ORTHO05D005802 7.4e-20 102.4 313 32.9
RcHm_v2.0_Chr7g0230591 Rosa chinensis HOM05D004863 ORTHO05D005802 1.4e-18 98.2 91 54.9
HanXRQChr08g0221801 Helianthus annuus HOM05D004863 ORTHO05D005802 3.8e-16 90.1 122 45.9
RcHm_v2.0_Chr7g0231161 Rosa chinensis HOM05D004863 ORTHO05D005802 4.9e-16 89.7 104 47.1
Thecc.10G012000 Theobroma cacao HOM05D004863 ORTHO05D005802 9.3e-15 85.5 74 58.1
RcHm_v2.0_Chr7g0236431 Rosa chinensis HOM05D004863 ORTHO05D005802 1.6e-14 84.7 68 58.8
RcHm_v2.0_Chr5g0049701 Rosa chinensis HOM05D004863 ORTHO05D005802 2.1e-14 84.3 65 61.5
PSO063G7659 Papaver somniferum HOM05D004863 ORTHO05D005802 1.0e-13 82.0 114 43.9
SEGI_17620 Sequoiadendron giganteum HOM05D004863 ORTHO05D005802 1.9e-12 77.8 95 47.4
RcHm_v2.0_Chr5g0049691 Rosa chinensis HOM05D004863 ORTHO05D005802 4.8e-11 73.2 201 33.3
RcHm_v2.0_Chr7g0230601 Rosa chinensis HOM05D004863 ORTHO05D005802 5.3e-10 69.7 169 36.1
CSS0049037 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 6.5e-08 62.8 217 30.0
ATR0174G036 Amborella trichopoda HOM05D004863 ORTHO05D005802 1.1e-07 62.0 388 24.0
FAN18G1445 Fragaria x ananassa HOM05D004863 ORTHO05D005802 7.1e-07 59.3 178 32.6
CSS0008249 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 1.2e-06 58.5 211 29.4
SMO142G0069 Selaginella moellendorffii HOM05D004863 ORTHO05D005802 3.5e-06 57.0 354 26.8


User provided reference genes

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