Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 2.5e-255 885.2 524 100.0
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 5.1e-224 781.2 524 82.3
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 1.5e-223 779.6 524 84.9
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 6.0e-217 757.7 426 86.2
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 1.6e-214 749.6 523 84.7
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 2.8e-214 748.8 426 85.7
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 1.2e-212 743.4 426 84.7
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 5.4e-210 734.6 524 84.5
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 3.9e-208 728.4 524 81.5
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.9e-207 726.1 426 81.7
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.9e-207 726.1 426 81.7
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 1.6e-201 706.4 426 81.2
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.0e-200 703.7 426 80.0
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.0e-200 703.7 423 79.0
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.9e-199 699.5 426 79.8
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 2.5e-199 699.1 426 79.6
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 4.3e-199 698.4 423 80.6
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 7.4e-199 697.6 426 80.0
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 1.3e-198 696.8 426 79.8
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 2.1e-198 696.0 426 79.3
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.1e-198 696.0 427 79.9
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 2.1e-198 696.0 426 79.3
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 1.1e-197 693.7 426 78.6
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 1.5e-196 689.9 427 77.8
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 2.0e-196 689.5 438 76.9
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 2.0e-196 689.5 426 78.2
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 7.6e-196 687.6 423 79.7
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 7.6e-196 687.6 426 78.6
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 1.0e-195 687.2 470 73.0
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 1.3e-195 686.8 427 78.7
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 1.3e-195 686.8 426 79.3
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 1.7e-195 686.4 437 77.3
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 1.7e-195 686.4 440 76.8
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 3.8e-195 685.3 426 77.9
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 8.4e-195 684.1 427 78.2
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 8.4e-195 684.1 427 77.3
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 3.2e-194 682.2 427 78.5
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 4.2e-194 681.8 428 78.3
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 4.2e-194 681.8 428 78.3
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 4.2e-194 681.8 430 76.7
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 5.5e-194 681.4 428 77.8
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 1.2e-193 680.2 419 81.1
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 1.2e-193 680.2 427 76.8
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 7.9e-193 677.6 429 77.2
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 1.0e-192 677.2 428 76.9
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 1.8e-192 676.4 425 76.9
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 3.0e-192 675.6 435 76.1
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 5.1e-192 674.9 426 77.5
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 1.1e-191 673.7 426 76.5
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 2.5e-191 672.5 427 77.3
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 9.6e-191 670.6 427 76.3
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 2.1e-190 669.5 426 77.7
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 2.4e-189 666.0 426 76.3
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 3.4e-188 662.1 423 78.0
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 1.7e-187 659.8 427 74.5
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 5.0e-187 658.3 427 74.5
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 3.2e-186 655.6 401 80.8
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 5.5e-186 654.8 424 75.5
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 9.3e-186 654.1 425 74.8
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 4.3e-183 645.2 398 78.9
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 4.3e-183 645.2 425 73.4
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 3.7e-182 642.1 460 69.6
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 1.4e-181 640.2 427 73.5
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 1.4e-181 640.2 428 75.5
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 2.0e-180 636.3 425 74.4
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 2.6e-180 636.0 428 72.7
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 3.4e-180 635.6 431 74.5
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 5.9e-180 634.8 468 68.6
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 7.7e-180 634.4 426 72.5
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.0e-179 634.0 422 73.7
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 2.2e-179 632.9 425 73.2
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 8.5e-179 630.9 427 72.1
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 1.1e-178 630.6 427 71.4
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 4.2e-178 628.6 427 73.5
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 7.2e-178 627.9 426 74.4
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 9.4e-178 627.5 341 86.2
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 2.1e-177 626.3 439 72.0
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 6.1e-177 624.8 424 71.7
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 7.9e-177 624.4 430 73.5
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 1.4e-176 623.6 439 71.8
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 2.3e-176 622.9 457 68.9
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 4.4e-175 618.6 430 73.0
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 2.2e-174 616.3 393 76.3
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 2.8e-174 615.9 442 69.5
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 6.3e-174 614.8 425 71.3
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 6.3e-174 614.8 427 71.9
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 5.0e-171 605.1 431 71.2
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 7.2e-170 601.3 341 82.7
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 9.4e-170 600.9 438 68.7
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 1.6e-169 600.1 316 89.6
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 1.8e-168 596.7 397 74.6
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 1.8e-168 596.7 427 69.3
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 5.2e-168 595.1 427 69.6
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.3e-166 590.5 388 75.5
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 4.8e-166 588.6 425 67.5
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 4.1e-165 585.5 379 73.6
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 7.0e-165 584.7 428 67.1
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.8e-160 570.1 364 74.5
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.6e-159 566.2 425 66.4
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 1.7e-158 563.5 393 71.2
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 4.5e-156 555.4 426 64.1
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 8.5e-155 551.2 424 64.6
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 4.7e-153 545.4 426 63.6
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 2.3e-152 543.1 371 72.8
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 1.5e-151 540.4 395 67.1
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 3.1e-149 532.7 307 79.2
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 2.7e-148 529.6 447 62.0
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.1e-141 507.7 345 71.9
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 1.4e-133 480.7 328 73.5
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 3.0e-131 473.0 293 75.1
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 1.4e-125 454.1 345 66.1
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 3.6e-121 439.5 438 53.0
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 1.4e-117 427.6 314 69.1
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.4e-117 426.8 437 57.0
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 1.3e-115 421.0 450 50.7
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 1.9e-114 417.2 353 58.9
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 1.1e-109 401.4 328 61.0
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 3.3e-106 389.8 324 55.6
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 3.8e-102 376.3 218 78.4
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 4.9e-102 375.9 332 60.2
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 8.1e-97 358.6 191 85.9
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 1.5e-87 327.8 437 44.4
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 8.4e-86 322.0 260 65.4
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 4.5e-79 299.7 224 67.4
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 2.0e-55 221.1 112 91.1
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 1.5e-50 204.9 264 50.0
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 2.6e-47 194.1 158 66.5
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 1.9e-45 188.0 138 70.3
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 2.8e-33 147.5 174 55.2
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 1.4e-32 145.2 298 34.2
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 4.0e-27 127.1 109 63.3
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 5.2e-27 126.7 78 75.6
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 1.5e-26 125.2 79 74.7
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 4.4e-26 123.6 266 35.0
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 7.8e-23 112.8 81 67.9
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 1.2e-18 99.0 212 33.0
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 3.5e-15 87.4 52 75.0
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 5.4e-08 63.5 29 86.2
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 6.0e-07 60.1 70 54.3
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 1.3e-06 58.9 27 88.9


User provided reference genes

Program Settings