Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2296 Trifolium pratense HOM05D003353 ORTHO05D003751 0.0e+00 1400.2 746 100.0
Psat1g059480 Pisum sativum HOM05D003353 ORTHO05D003751 2.2e-111 407.5 397 60.2
TPR.G2281 Trifolium pratense HOM05D003353 ORTHO05D003751 2.4e-110 404.1 397 60.7
Glyma.19G010200 Glycine max HOM05D003353 ORTHO05D003751 2.0e-104 384.4 401 57.4
Lj2g0012220 Lotus japonicus HOM05D003353 ORTHO05D003751 1.6e-101 374.8 399 57.4
Glyma.13G170000 Glycine max HOM05D003353 ORTHO05D003751 8.5e-100 369.0 403 55.8
Phvul.004G017600 Phaseolus vulgaris HOM05D003353 ORTHO05D003751 9.5e-99 365.5 401 54.9
VMungo0464G0152 Vigna mungo HOM05D003353 ORTHO05D003751 2.7e-98 364.0 403 53.8
Medtr6g007650 Medicago truncatula HOM05D003353 ORTHO05D003751 3.5e-93 347.1 397 53.7
arahy.Tifrunner.gnm1.ann1.S45US4 Arachis hypogaea HOM05D003353 ORTHO05D003751 1.0e-92 345.5 395 53.7
Lalb_Chr02g0160231 Lupinus albus HOM05D003353 ORTHO05D003751 1.0e-89 335.5 399 50.9
Lalb_Chr21g0319411 Lupinus albus HOM05D003353 ORTHO05D003751 1.8e-89 334.7 399 51.4
Lalb_Chr06g0176091 Lupinus albus HOM05D003353 ORTHO05D003751 7.0e-86 322.8 399 49.6
Haze_14661 Corylus avellana HOM05D003353 ORTHO05D003751 3.4e-80 303.9 402 46.0
CiPaw.03G037100 Carya illinoinensis HOM05D003353 ORTHO05D003751 9.8e-80 302.4 402 46.5
Cfa007435 Carpinus fangiana HOM05D003353 ORTHO05D003751 6.4e-79 299.7 401 45.6
QL02p076799 Quercus lobata HOM05D003353 ORTHO05D003751 8.3e-79 299.3 402 46.5
Prupe.3G283100 Prunus persica HOM05D003353 ORTHO05D003751 4.1e-78 297.0 401 45.6
MD17G1035500 Malus domestica HOM05D003353 ORTHO05D003751 9.2e-78 295.8 401 45.9
CANSAT64G0328 Cannabis sativa HOM05D003353 ORTHO05D003751 1.3e-76 292.0 404 45.5
TWI36G0997 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 3.0e-76 290.8 401 45.4
MD09G1035200 Malus domestica HOM05D003353 ORTHO05D003751 1.5e-75 288.5 401 45.6
TWI12G0214 Tripterygium wilfordii HOM05D003353 ORTHO05D003751 2.5e-75 287.7 401 45.4
CiPaw.04G024200 Carya illinoinensis HOM05D003353 ORTHO05D003751 2.8e-74 284.3 402 44.8
GSVIVG01032492001 Vitis vinifera HOM05D003353 ORTHO05D003751 6.2e-74 283.1 402 43.8
TAR371G0580 Trochodendron aralioides HOM05D003353 ORTHO05D003751 5.2e-73 280.0 410 42.9
Gohir.A09G026000 Gossypium hirsutum HOM05D003353 ORTHO05D003751 1.2e-72 278.9 427 42.4
Gohir.D09G025300 Gossypium hirsutum HOM05D003353 ORTHO05D003751 2.6e-72 277.7 427 42.9
Gorai.006G029600 Gossypium raimondii HOM05D003353 ORTHO05D003751 2.6e-72 277.7 427 42.9
TAR629G0276 Trochodendron aralioides HOM05D003353 ORTHO05D003751 3.4e-72 277.3 410 42.2
Thecc.04G008000 Theobroma cacao HOM05D003353 ORTHO05D003751 4.4e-72 276.9 402 43.0
FvH4_6g50560 Fragaria vesca HOM05D003353 ORTHO05D003751 5.8e-72 276.6 402 44.0
Ciclev10014026m.g Citrus clementina HOM05D003353 ORTHO05D003751 9.8e-72 275.8 401 43.4
COL.COLO4_28936 Corchorus olitorius HOM05D003353 ORTHO05D003751 1.3e-71 275.4 431 40.8
RcHm_v2.0_Chr2g0171081 Rosa chinensis HOM05D003353 ORTHO05D003751 1.7e-71 275.0 402 43.3
Duzib147G1510 Durio zibethinus HOM05D003353 ORTHO05D003751 2.2e-71 274.6 432 42.1
FAN14G4206 Fragaria x ananassa HOM05D003353 ORTHO05D003751 2.9e-71 274.2 402 43.3
Atru.chr6.2192 Acer truncatum HOM05D003353 ORTHO05D003751 8.3e-71 272.7 402 43.0
FAN02G2799 Fragaria x ananassa HOM05D003353 ORTHO05D003751 1.9e-70 271.6 402 42.8
CsaV3_3G042270 Cucumis sativus L. HOM05D003353 ORTHO05D003751 4.1e-70 270.4 458 39.1
FAN09G4608 Fragaria x ananassa HOM05D003353 ORTHO05D003751 4.1e-70 270.4 402 42.8
MELO3C009946.2 Cucumis melo HOM05D003353 ORTHO05D003751 2.1e-69 268.1 459 39.0
Nn3g16906 Nelumbo nucifera HOM05D003353 ORTHO05D003751 1.3e-68 265.4 406 42.4
Sed0022584 Sechium edule HOM05D003353 ORTHO05D003751 1.7e-68 265.0 396 42.7
Dinv24865 Davidia involucrata HOM05D003353 ORTHO05D003751 8.6e-68 262.7 409 41.6
Dinv15308 Davidia involucrata HOM05D003353 ORTHO05D003751 1.5e-67 261.9 400 41.8
EL10Ac2g03352 Beta vulgaris HOM05D003353 ORTHO05D003751 7.3e-67 259.6 406 41.9
Nn4g22812 Nelumbo nucifera HOM05D003353 ORTHO05D003751 1.2e-66 258.8 409 39.9
Manes.15G182800 Manihot esculenta HOM05D003353 ORTHO05D003751 3.6e-66 257.3 400 41.5
ClCG10G014330 Citrullus lanatus HOM05D003353 ORTHO05D003751 6.2e-66 256.5 459 38.6
PGR142G1415 Punica granatum HOM05D003353 ORTHO05D003751 4.0e-65 253.8 392 40.8
GSVIVG01020232001 Vitis vinifera HOM05D003353 ORTHO05D003751 5.2e-65 253.4 400 40.2
Aqoxy3G02993 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 1.2e-64 252.3 398 40.5
Eucgr.I01818 Eucalyptus grandis HOM05D003353 ORTHO05D003751 1.3e-63 248.8 435 38.6
THA.LOC104822384 Tarenaya hassleriana HOM05D003353 ORTHO05D003751 3.8e-63 247.3 391 41.4
Actinidia06029 Actinidia chinensis HOM05D003353 ORTHO05D003751 1.4e-62 245.4 400 40.8
Aa31LG5G10560 Aethionema arabicum HOM05D003353 ORTHO05D003751 2.4e-62 244.6 397 42.1
BcaC09g47659 Brassica carinata HOM05D003353 ORTHO05D003751 2.4e-62 244.6 399 41.4
BolC1t05958H Brassica oleracea HOM05D003353 ORTHO05D003751 2.4e-62 244.6 399 41.4
PSO063G6215 Papaver somniferum HOM05D003353 ORTHO05D003751 5.4e-62 243.4 415 37.8
PSO832G1186 Papaver somniferum HOM05D003353 ORTHO05D003751 5.4e-62 243.4 415 37.8
Sp3g00610 Schrenkiella parvula HOM05D003353 ORTHO05D003751 7.1e-62 243.0 398 40.5
ATR0691G050 Amborella trichopoda HOM05D003353 ORTHO05D003751 1.6e-61 241.9 417 39.1
AUR62042408 Chenopodium quinoa HOM05D003353 ORTHO05D003751 1.6e-61 241.9 407 38.1
BNapus_Darmor_BZH_scaffold_119p00030 Brassica napus HOM05D003353 ORTHO05D003751 2.1e-61 241.5 399 41.1
BNapus_Darmor_BZH_scaffold_97p00400 Brassica napus HOM05D003353 ORTHO05D003751 2.1e-61 241.5 399 41.1
BraA01t04666Z Brassica rapa HOM05D003353 ORTHO05D003751 2.1e-61 241.5 399 41.1
AUR62032109 Chenopodium quinoa HOM05D003353 ORTHO05D003751 6.0e-61 240.0 407 37.8
A05p44550 Brassica napus HOM05D003353 ORTHO05D003751 1.0e-60 239.2 392 41.3
BraA05t23202Z Brassica rapa HOM05D003353 ORTHO05D003751 1.0e-60 239.2 392 41.3
Thhalv10019872m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 1.0e-60 239.2 398 40.7
BolC5t35150H Brassica oleracea HOM05D003353 ORTHO05D003751 1.3e-60 238.8 397 39.3
Sc06g0001590 Simmondsia chinensis HOM05D003353 ORTHO05D003751 1.3e-60 238.8 398 39.2
vmacro05815 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 1.7e-60 238.4 405 39.3
C09p75140 Brassica napus HOM05D003353 ORTHO05D003751 3.9e-60 237.3 397 39.3
Atru.chr11.2012 Acer truncatum HOM05D003353 ORTHO05D003751 1.9e-59 235.0 386 39.1
BcaB04g21418 Brassica carinata HOM05D003353 ORTHO05D003751 1.9e-59 235.0 399 40.1
Ah.16g106640 Amaranthus hybridus HOM05D003353 ORTHO05D003751 7.3e-59 233.0 394 38.8
Thhalv10022520m.g Eutrema salsugineum HOM05D003353 ORTHO05D003751 7.3e-59 233.0 398 39.9
AL3G10710 Arabidopsis lyrata HOM05D003353 ORTHO05D003751 2.1e-58 231.5 402 39.8
AT3G01460 Arabidopsis thaliana HOM05D003353 ORTHO05D003751 2.8e-58 231.1 398 38.7
Hund12469 Selenicereus undatus HOM05D003353 ORTHO05D003751 1.1e-57 229.2 401 39.2
BNapus_Darmor_BZH_scaffold_133p00020 Brassica napus HOM05D003353 ORTHO05D003751 2.4e-57 228.0 390 41.0
CDE10G0339 Ceratophyllum demersum HOM05D003353 ORTHO05D003751 2.4e-57 228.0 406 36.2
Carub.0003s0064 Capsella rubella HOM05D003353 ORTHO05D003751 1.2e-56 225.7 286 46.5
Lj7A591T75 Lonicera japonica HOM05D003353 ORTHO05D003751 1.2e-56 225.7 401 35.9
Lj6C805G5 Lonicera japonica HOM05D003353 ORTHO05D003751 3.2e-54 217.6 402 35.8
HPP92_008854 Vanilla planifolia HOM05D003353 ORTHO05D003751 7.1e-54 216.5 409 35.2
DCAR_007093 Daucus carota HOM05D003353 ORTHO05D003751 7.8e-53 213.0 393 36.6
DCAR_031098 Daucus carota HOM05D003353 ORTHO05D003751 1.0e-52 212.6 387 35.7
Rhsim12G0121100 Rhododendron simsii HOM05D003353 ORTHO05D003751 3.0e-52 211.1 384 37.5
Rhsim10G0023100 Rhododendron simsii HOM05D003353 ORTHO05D003751 3.9e-52 210.7 409 36.9
Sabra17G0060500 Salix brachista HOM05D003353 ORTHO05D003751 3.9e-52 210.7 382 36.4
Manes.12G029600 Manihot esculenta HOM05D003353 ORTHO05D003751 6.6e-52 209.9 379 36.1
MSTRG.7892 Avicennia marina HOM05D003353 ORTHO05D003751 8.7e-52 209.5 380 36.3
Cc11_g14600 Coffea canephora HOM05D003353 ORTHO05D003751 8.7e-52 209.5 383 36.0
Peaxi162Scf00338g00002 Petunia axillaris HOM05D003353 ORTHO05D003751 3.3e-51 207.6 377 37.9
Cpa.g.sc215.7 Carica papaya HOM05D003353 ORTHO05D003751 9.6e-51 206.1 234 52.1
Oeu056394.4 Olea europaea HOM05D003353 ORTHO05D003751 2.1e-50 204.9 402 34.1
Actinidia15041 Actinidia chinensis HOM05D003353 ORTHO05D003751 2.8e-50 204.5 381 35.4
Nitab4.5_0002579g0080 Nicotiana tabacum HOM05D003353 ORTHO05D003751 2.8e-50 204.5 376 38.3
CSS0024625 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 6.2e-50 203.4 383 36.6
CAN.G1420.2 Capsicum annuum HOM05D003353 ORTHO05D003751 1.1e-49 202.6 379 37.5
Oeu003445.1 Olea europaea HOM05D003353 ORTHO05D003751 3.1e-49 201.1 368 37.2
Cfa009137 Carpinus fangiana HOM05D003353 ORTHO05D003751 4.0e-49 200.7 372 37.4
Haze_12169 Corylus avellana HOM05D003353 ORTHO05D003751 4.0e-49 200.7 371 37.5
Ciclev10030471m.g Citrus clementina HOM05D003353 ORTHO05D003751 5.3e-49 200.3 386 35.5
Nitab4.5_0000113g0210 Nicotiana tabacum HOM05D003353 ORTHO05D003751 9.0e-49 199.5 376 37.8
SHI25551 Sapria himalayana HOM05D003353 ORTHO05D003751 9.9e-48 196.1 335 40.0
vmacro16257 Vaccinium macrocarpon HOM05D003353 ORTHO05D003751 9.9e-48 196.1 385 36.6
Migut.L01407 Erythranthe guttata HOM05D003353 ORTHO05D003751 2.4e-46 191.4 388 33.0
SGA_v2.0_scaffold165G38252 Striga asiatica HOM05D003353 ORTHO05D003751 7.1e-46 189.9 390 34.6
ECA233G2073 Erigeron canadensis HOM05D003353 ORTHO05D003751 6.0e-45 186.8 398 32.7
HanXRQChr12g0368561 Helianthus annuus HOM05D003353 ORTHO05D003751 1.0e-44 186.0 397 32.7
Potri.017G072580 Populus trichocarpa HOM05D003353 ORTHO05D003751 1.0e-44 186.0 270 44.4
DCAR_021679 Daucus carota HOM05D003353 ORTHO05D003751 1.3e-44 185.7 399 31.6
Sopen05g001650 Solanum pennellii HOM05D003353 ORTHO05D003751 1.3e-44 185.7 385 35.1
SEGI_35053 Sequoiadendron giganteum HOM05D003353 ORTHO05D003751 3.9e-44 184.1 401 32.9
QL03p061451 Quercus lobata HOM05D003353 ORTHO05D003751 1.6e-42 178.7 371 34.5
Lsat_1_v5_gn_8_157680 Lactuca sativa HOM05D003353 ORTHO05D003751 4.5e-40 170.6 392 31.6
CSS0032060 Camellia sinensis var. sinensis HOM05D003353 ORTHO05D003751 9.0e-33 146.4 209 44.5
Lsat_1_v5_gn_4_6960 Lactuca sativa HOM05D003353 ORTHO05D003751 6.5e-31 140.2 377 29.2
unitig_26.g10338 Utricularia gibba HOM05D003353 ORTHO05D003751 4.2e-30 137.5 213 38.0
ECA199G0007 Erigeron canadensis HOM05D003353 ORTHO05D003751 1.2e-29 136.0 382 28.8
HanXRQChr17g0569791 Helianthus annuus HOM05D003353 ORTHO05D003751 1.2e-29 136.0 392 26.3
Lsat_1_v5_gn_4_182161 Lactuca sativa HOM05D003353 ORTHO05D003751 3.9e-28 131.0 359 28.1
Lsat_1_v5_gn_4_181301 Lactuca sativa HOM05D003353 ORTHO05D003751 1.1e-27 129.4 359 28.1
Aqoxy3G00985 Aquilegia oxysepala HOM05D003353 ORTHO05D003751 9.0e-25 119.8 278 32.7
ECA232G4683 Erigeron canadensis HOM05D003353 ORTHO05D003751 7.6e-24 116.7 269 31.6
HanXRQChr09g0266041 Helianthus annuus HOM05D003353 ORTHO05D003751 9.3e-22 109.8 271 29.9
Dinv35052 Davidia involucrata HOM05D003353 ORTHO05D003751 1.1e-19 102.8 176 38.6
Pp3c1_860 Physcomitrium patens HOM05D003353 ORTHO05D003751 1.6e-18 99.0 283 27.9
Lsat_1_v5_gn_4_181221 Lactuca sativa HOM05D003353 ORTHO05D003751 6.3e-18 97.1 359 25.1
Pp3c2_35750 Physcomitrium patens HOM05D003353 ORTHO05D003751 6.3e-18 97.1 282 27.0
AagrBONN_evm.TU.Sc2ySwM_228.4332 Anthoceros agrestis HOM05D003353 ORTHO05D003751 4.5e-16 90.9 387 23.8
Migut.H00129 Erythranthe guttata HOM05D003353 ORTHO05D003751 4.5e-16 90.9 381 24.9
Migut.H00131 Erythranthe guttata HOM05D003353 ORTHO05D003751 2.2e-15 88.6 272 27.9
Dinv35053 Davidia involucrata HOM05D003353 ORTHO05D003751 3.2e-14 84.7 167 35.3
Migut.H00132 Erythranthe guttata HOM05D003353 ORTHO05D003751 1.2e-13 82.8 272 27.2
Zm00001eb206240 Zea mays HOM05D003353 ORTHO05D003751 2.7e-13 81.6 104 40.4
Lalb_Chr14g0362801 Lupinus albus HOM05D003353 ORTHO05D003751 7.9e-13 80.1 52 67.3
Potri.017G072460 Populus trichocarpa HOM05D003353 ORTHO05D003751 3.9e-12 77.8 43 76.7
Mapoly0064s0056 Marchantia polymorpha HOM05D003353 ORTHO05D003751 1.1e-11 76.3 131 35.1
Pp3c6_8120 Physcomitrium patens HOM05D003353 ORTHO05D003751 1.1e-11 76.3 104 36.5
Actinidia13514 Actinidia chinensis HOM05D003353 ORTHO05D003751 2.6e-11 75.1 94 41.5
Lalb_Chr14g0362821 Lupinus albus HOM05D003353 ORTHO05D003751 1.7e-10 72.4 54 55.6
PSO732G0719 Papaver somniferum HOM05D001944 ORTHO05D002405 1.7e-10 72.4 42 71.4
Pp3c5_19640 Physcomitrium patens HOM05D003353 ORTHO05D003751 4.8e-10 70.9 107 34.6
Nn2g15375 Nelumbo nucifera HOM05D003353 ORTHO05D003751 1.8e-09 68.9 59 57.6


User provided reference genes

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