Gene: Lsat_1_v5_gn_8_157680

General Information

Structural Information

  • Species Lactuca sativa
  • Gene Identifier Lsat_1_v5_gn_8_157680
  • Transcript Identifier Lsat_1_v5_gn_8_157680.1
  • Gene Type Coding gene
  • Location Lsat_1_v8_lg_8 : 275855171-275864616 : negative

Gene Family Information

  • ID HOM05D003353
  • #Genes/#Species 204/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lsat_1_v5_gn_8_157680.v5
  • pacid 38955521

Descriptions

  • Description PF00628//PF01429//PF05965//PF15612 - PHD-finger (PHD) // Methyl-CpG binding domain (MBD) // F/Y rich C-terminus (FYRC) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1)
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043967
ISO
PLAZA Integrative Orthologyhistone H4 acetylation AT3G01460
GO:0048573
ISO
PLAZA Integrative Orthologyphotoperiodism, flowering AT3G01460
GO:0043966
ISO
PLAZA Integrative Orthologyhistone H3 acetylation AT3G01460
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT3G01460
GO:0016573
ISO
PLAZA Integrative Orthologyhistone acetylation AT3G01460
GO:0010223
ISO
PLAZA Integrative Orthologysecondary shoot formation AT3G01460

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003677
IEA
InterProDNA binding
GO:0004402
ISO
PLAZA Integrative Orthologyhistone acetyltransferase activity AT3G01460
GO:0042393
ISO
PLAZA Integrative Orthologyhistone binding AT3G01460

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G01460

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011011 Zinc finger, FYVE/PHD-type
IPR019787 Zinc finger, PHD-finger
IPR028941 WHIM2 domain
IPR036427 Bromodomain-like superfamily
IPR001841 Zinc finger, RING-type
IPR016177 DNA-binding domain superfamily
IPR001739 Methyl-CpG DNA binding
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR028942 WHIM1 domain
IPR001965 Zinc finger, PHD-type
IPR003889 FY-rich, C-terminal
IPR001487 Bromodomain
Mapman id Description
12.4.4.6 Chromatin organisation.nucleosome remodeling.SWR1 chromatin remodeling complex.methylation reader component MBD9