Gene: arahy.Tifrunner.gnm1.ann1.S45US4
General Information
Structural Information
- Species Arachis hypogaea
- Gene Identifier arahy.Tifrunner.gnm1.ann1.S45US4
- Transcript Identifier arahy.Tifrunner.gnm1.ann1.S45US4.1
- Gene Type Coding gene
- Location arahy.Tifrunner.gnm1.Arahy.05 : 105917956-105929039 : negative
Gene Family Information
- ID HOM05D003353
- #Genes/#Species 204/94
- Phylogenetic origin
- ID ORTHO05D003751
- #Genes/#Species 207/94
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- id arahy.Tifrunner.gnm1.ann1.S45US4.v1.0
- pacid 42623737
Descriptions
- Description PF00628//PF01429//PF15612 - PHD-finger (PHD) // Methyl-CpG binding domain (MBD) // WSTF, HB1, Itc1p, MBD9 motif 1 (WHIM1)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043967 | ISO | PLAZA Integrative Orthology | histone H4 acetylation | AT3G01460 |
| GO:0048573 | ISO | PLAZA Integrative Orthology | photoperiodism, flowering | AT3G01460 |
| GO:0043966 | ISO | PLAZA Integrative Orthology | histone H3 acetylation | AT3G01460 |
| GO:0006355 | ISO | PLAZA Integrative Orthology | regulation of transcription, DNA-templated | AT3G01460 |
| GO:0016573 | ISO | PLAZA Integrative Orthology | histone acetylation | AT3G01460 |
| GO:0010223 | ISO | PLAZA Integrative Orthology | secondary shoot formation | AT3G01460 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0004402 | ISO | PLAZA Integrative Orthology | histone acetyltransferase activity | AT3G01460 |
| GO:0042393 | ISO | PLAZA Integrative Orthology | histone binding | AT3G01460 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G01460 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT3G01460 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR028942 | WHIM1 domain |
| IPR001965 | Zinc finger, PHD-type |
| IPR011011 | Zinc finger, FYVE/PHD-type |
| IPR019787 | Zinc finger, PHD-finger |
| IPR016177 | DNA-binding domain superfamily |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR036427 | Bromodomain-like superfamily |
| IPR001739 | Methyl-CpG DNA binding |
| Mapman id | Description |
|---|---|
| 12.4.4.6 | Chromatin organisation.nucleosome remodeling.SWR1 chromatin remodeling complex.methylation reader component MBD9 |