Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 9.2e-75 283.5 145 100.0
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 7.9e-26 120.9 78 84.6
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 1.5e-24 116.7 78 79.5
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 1.0e-20 104.0 71 74.6
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 1.9e-19 99.8 77 70.1
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 1.9e-19 99.8 77 71.4
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 3.5e-18 95.5 77 67.5
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 3.0e-17 92.4 61 82.0
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 7.4e-16 87.8 81 59.3
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 6.3e-15 84.7 57 75.4
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 1.8e-14 83.2 55 74.5
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 9.0e-14 80.9 78 57.7
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 9.0e-14 80.9 73 61.6
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 1.5e-13 80.1 77 58.4
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 2.0e-13 79.7 78 56.4
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 2.6e-13 79.3 78 59.0
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 5.9e-13 78.2 78 56.4
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 5.9e-13 78.2 80 57.5
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 7.7e-13 77.8 81 58.0
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 1.0e-12 77.4 69 60.9
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 1.7e-12 76.6 78 56.4
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 1.7e-12 76.6 79 58.2
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 2.9e-12 75.9 80 55.0
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 3.8e-12 75.5 68 61.8
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 3.8e-12 75.5 68 61.8
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 8.5e-12 74.3 69 53.6
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 1.1e-11 73.9 77 55.8
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 1.4e-11 73.6 82 52.4
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 1.4e-11 73.6 77 54.5
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 1.4e-11 73.6 59 61.0
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 1.9e-11 73.2 76 52.6
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.9e-11 73.2 78 52.6
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 2.5e-11 72.8 70 58.6
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 2.5e-11 72.8 77 54.5
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 5.5e-11 71.6 68 58.8
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 5.5e-11 71.6 80 56.2
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 5.5e-11 71.6 77 54.5
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 7.2e-11 71.2 78 53.8
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 2.1e-10 69.7 59 61.0
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 2.1e-10 69.7 82 52.4
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 2.7e-10 69.3 64 57.8
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 2.7e-10 69.3 80 50.0
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 2.7e-10 69.3 66 56.1
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 3.6e-10 68.9 79 50.6
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 3.6e-10 68.9 77 51.9
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 3.6e-10 68.9 100 41.0
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 3.6e-10 68.9 100 41.0
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 3.6e-10 68.9 33 97.0
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 4.6e-10 68.6 111 37.8
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 4.6e-10 68.6 60 56.7
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 4.6e-10 68.6 80 55.0
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 6.1e-10 68.2 77 50.6
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 6.1e-10 68.2 68 52.9
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 7.9e-10 67.8 69 53.6
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 7.9e-10 67.8 80 53.8
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 7.9e-10 67.8 80 53.8
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 1.0e-09 67.4 76 47.4
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 1.0e-09 67.4 73 53.4
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.0e-09 67.4 67 52.2
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 1.0e-09 67.4 71 56.3
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 1.0e-09 67.4 68 52.9
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 1.8e-09 66.6 70 55.7
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 1.8e-09 66.6 81 48.1
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 1.8e-09 66.6 81 48.1
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 1.8e-09 66.6 78 47.4
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 1.8e-09 66.6 78 47.4
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 1.8e-09 66.6 77 49.4
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 2.3e-09 66.2 68 54.4
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 2.3e-09 66.2 68 54.4
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 2.3e-09 66.2 111 39.6
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 3.0e-09 65.9 69 52.2
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 3.0e-09 65.9 69 52.2
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 3.9e-09 65.5 75 53.3
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 5.1e-09 65.1 79 48.1
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 5.1e-09 65.1 69 50.7
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 6.7e-09 64.7 68 51.5
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 6.7e-09 64.7 69 50.7
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 1.1e-08 63.9 68 55.9
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 1.5e-08 63.5 57 52.6
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 2.5e-08 62.8 58 51.7
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 2.5e-08 62.8 58 51.7
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 2.5e-08 62.8 58 51.7
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 2.5e-08 62.8 58 51.7
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 3.3e-08 62.4 57 59.6
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 3.3e-08 62.4 121 33.9
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 4.3e-08 62.0 75 45.3
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 4.3e-08 62.0 71 52.1
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 4.3e-08 62.0 81 48.1
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 4.3e-08 62.0 59 61.0
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 5.7e-08 61.6 58 50.0
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 7.4e-08 61.2 57 59.6
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 9.7e-08 60.8 71 49.3
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 1.3e-07 60.5 59 54.2
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 1.3e-07 60.5 60 55.0
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 1.7e-07 60.1 63 47.6
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 2.2e-07 59.7 58 51.7
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 3.7e-07 58.9 63 47.6
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 3.7e-07 58.9 63 47.6
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 3.7e-07 58.9 53 58.5
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 4.8e-07 58.5 71 50.7
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 4.8e-07 58.5 91 41.8
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 8.2e-07 57.8 59 50.8
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.4e-06 57.0 56 51.8
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 5.3e-06 55.1 34 82.4
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 9.1e-06 54.3 73 49.3


User provided reference genes

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