Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20574 Trifolium pratense HOM05D003261 ORTHO05D004230 2.0e-35 151.8 69 100.0
TPR.G22357 Trifolium pratense HOM05D003261 ORTHO05D004230 5.2e-28 127.1 60 93.3
Medtr2g436510 Medicago truncatula HOM05D003261 ORTHO05D004230 5.8e-27 123.6 60 91.7
Psat1g155040 Pisum sativum HOM05D003261 ORTHO05D004230 5.8e-27 123.6 60 91.7
arahy.Tifrunner.gnm1.ann1.9TJ054 Arachis hypogaea HOM05D003261 ORTHO05D004230 1.7e-26 122.1 60 88.3
arahy.Tifrunner.gnm1.ann1.JJQ0MC Arachis hypogaea HOM05D003261 ORTHO05D004230 1.7e-26 122.1 60 88.3
Lj6g0023887 Lotus japonicus HOM05D003261 ORTHO05D004230 2.2e-26 121.7 60 88.3
Ca_01925_v3 Cicer arietinum L. HOM05D003261 ORTHO05D004230 8.4e-26 119.8 60 88.3
Glyma.09G043800 Glycine max HOM05D003261 ORTHO05D004230 8.4e-26 119.8 60 88.3
Glyma.15G149300 Glycine max HOM05D003261 ORTHO05D004230 8.4e-26 119.8 60 88.3
VMungo1309G2776 Vigna mungo HOM05D003261 ORTHO05D004230 1.4e-25 119.0 60 85.0
Peaxi162Scf00089g00028 Petunia axillaris HOM05D003261 ORTHO05D004230 1.9e-25 118.6 60 83.3
Phvul.009G249100 Phaseolus vulgaris HOM05D003261 ORTHO05D004230 1.9e-25 118.6 60 86.7
MSTRG.20825 Avicennia marina HOM05D003261 ORTHO05D004230 5.4e-25 117.1 64 81.2
Cc02_g37840 Coffea canephora HOM05D003261 ORTHO05D004230 7.1e-25 116.7 64 79.7
Nitab4.5_0003111g0030 Nicotiana tabacum HOM05D003261 ORTHO05D004230 9.2e-25 116.3 60 83.3
Rhsim06G0116500 Rhododendron simsii HOM05D003261 ORTHO05D004230 9.2e-25 116.3 60 81.7
SalBow3G0655 Salvia bowleyana HOM05D003261 ORTHO05D004230 9.2e-25 116.3 60 83.3
BcaC06g32973 Brassica carinata HOM05D003261 ORTHO05D004230 1.2e-24 115.9 63 79.4
BcaC06g33437 Brassica carinata HOM05D003261 ORTHO05D004230 1.2e-24 115.9 63 79.4
A03p49450 Brassica napus HOM05D003261 ORTHO05D004230 1.2e-24 115.9 63 79.4
C07p47500 Brassica napus HOM05D003261 ORTHO05D004230 1.2e-24 115.9 63 79.4
BolC7t45277H Brassica oleracea HOM05D003261 ORTHO05D004230 1.2e-24 115.9 63 79.4
BraA03t14046Z Brassica rapa HOM05D003261 ORTHO05D004230 1.2e-24 115.9 63 79.4
Thhalv10025068m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 1.2e-24 115.9 63 79.4
vmacro08167 Vaccinium macrocarpon HOM05D003261 ORTHO05D004230 1.6e-24 115.5 60 81.7
BcaNung00239 Brassica carinata HOM05D003261 ORTHO05D004230 2.7e-24 114.8 63 77.8
CARHR091900 Cardamine hirsuta HOM05D003261 ORTHO05D004230 2.7e-24 114.8 60 81.7
Peaxi162Scf00056g00015 Petunia axillaris HOM05D003261 ORTHO05D004230 2.7e-24 114.8 60 81.7
Sp7g14350 Schrenkiella parvula HOM05D003261 ORTHO05D004230 2.7e-24 114.8 63 77.8
CANSAT78G0131 Cannabis sativa HOM05D003261 ORTHO05D004230 3.5e-24 114.4 60 83.3
PGR004G2696 Punica granatum HOM05D003261 ORTHO05D004230 3.5e-24 114.4 60 80.0
Rhsim12G0061000 Rhododendron simsii HOM05D003261 ORTHO05D004230 3.5e-24 114.4 60 80.0
Sc19g0005390 Simmondsia chinensis HOM05D003261 ORTHO05D004230 3.5e-24 114.4 60 81.7
SGA_v2.0_scaffold95G28842 Striga asiatica HOM05D003261 ORTHO05D004230 3.5e-24 114.4 64 78.1
CSS0009030 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 4.6e-24 114.0 60 80.0
CSS0013014 Camellia sinensis var. sinensis HOM05D003261 ORTHO05D004230 4.6e-24 114.0 60 80.0
Lalb_Chr15g0083461 Lupinus albus HOM05D003261 ORTHO05D004230 4.6e-24 114.0 60 81.7
PSO170G4560 Papaver somniferum HOM05D003261 ORTHO05D004230 4.6e-24 114.0 60 80.0
PSO407G0331 Papaver somniferum HOM05D003261 ORTHO05D004230 4.6e-24 114.0 60 80.0
Potri.010G012800 Populus trichocarpa HOM05D003261 ORTHO05D004230 4.6e-24 114.0 60 83.3
AL3G29570 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 6.0e-24 113.6 60 80.0
unitig_22.g5357 Utricularia gibba HOM05D003261 ORTHO05D004230 6.0e-24 113.6 64 79.7
unitig_8.g3803 Utricularia gibba HOM05D003261 ORTHO05D004230 6.0e-24 113.6 64 78.1
Aa31LG10G6240 Aethionema arabicum HOM05D003261 ORTHO05D004230 7.8e-24 113.2 60 80.0
Migut.B01741 Erythranthe guttata HOM05D003261 ORTHO05D004230 7.8e-24 113.2 60 80.0
Nitab4.5_0001251g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 7.8e-24 113.2 60 81.7
AL7G39370 Arabidopsis lyrata HOM05D003261 ORTHO05D004230 1.0e-23 112.8 63 76.2
AT3G16650 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 1.0e-23 112.8 60 78.3
AT4G15900 Arabidopsis thaliana HOM05D003261 ORTHO05D004230 1.0e-23 112.8 63 76.2
Carub.0007s2576 Capsella rubella HOM05D003261 ORTHO05D004230 1.0e-23 112.8 63 76.2
Cpa.g.sc16.189 Carica papaya HOM05D003261 ORTHO05D004230 1.0e-23 112.8 60 80.0
Haze_01185 Corylus avellana HOM05D003261 ORTHO05D004230 1.0e-23 112.8 60 80.0
Manes.03G196900 Manihot esculenta HOM05D003261 ORTHO05D004230 1.3e-23 112.5 60 80.0
Sp3g14940 Schrenkiella parvula HOM05D003261 ORTHO05D004230 1.3e-23 112.5 63 76.2
TAR623G1368 Trochodendron aralioides HOM05D003261 ORTHO05D004230 1.3e-23 112.5 69 72.5
Atru.chr4.2874 Acer truncatum HOM05D003261 ORTHO05D004230 1.7e-23 112.1 60 80.0
CARHR290440 Cardamine hirsuta HOM05D003261 ORTHO05D004230 1.7e-23 112.1 60 78.3
CiPaw.02G081900 Carya illinoinensis HOM05D003261 ORTHO05D004230 1.7e-23 112.1 60 80.0
Lj7A515T86 Lonicera japonica HOM05D003261 ORTHO05D004230 1.7e-23 112.1 60 80.0
Solyc01g094480.4 Solanum lycopersicum HOM05D003261 ORTHO05D004230 1.7e-23 112.1 60 80.0
Sopen01g038290 Solanum pennellii HOM05D003261 ORTHO05D004230 1.7e-23 112.1 60 80.0
ClCG06G005050 Citrullus lanatus HOM05D003261 ORTHO05D004230 2.3e-23 111.7 60 80.0
MELO3C021320.2 Cucumis melo HOM05D003261 ORTHO05D004230 2.3e-23 111.7 60 80.0
CsaV3_6G023930 Cucumis sativus L. HOM05D003261 ORTHO05D004230 2.3e-23 111.7 60 80.0
Os03g0339100 Oryza sativa ssp. japonica HOM05D003261 ORTHO05D004230 2.3e-23 111.7 58 82.8
Sabra10G0008000 Salix brachista HOM05D003261 ORTHO05D004230 2.3e-23 111.7 60 81.7
Sed0025564 Sechium edule HOM05D003261 ORTHO05D004230 2.3e-23 111.7 60 80.0
CiPaw.01G147300 Carya illinoinensis HOM05D003261 ORTHO05D004230 3.0e-23 111.3 60 80.0
Eucgr.H03935 Eucalyptus grandis HOM05D003261 ORTHO05D004230 3.0e-23 111.3 60 78.3
Lsat_1_v5_gn_4_36321 Lactuca sativa HOM05D003261 ORTHO05D004230 3.0e-23 111.3 60 78.3
Nn3g21489 Nelumbo nucifera HOM05D003261 ORTHO05D004230 3.0e-23 111.3 60 81.7
QL06p009632 Quercus lobata HOM05D003261 ORTHO05D004230 3.0e-23 111.3 60 78.3
THA.LOC104820293 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 3.0e-23 111.3 60 80.0
Zm00001eb051300 Zea mays HOM05D003261 ORTHO05D004230 3.0e-23 111.3 58 81.0
Aqoxy5G00755 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 3.9e-23 110.9 60 80.0
AUR62008590 Chenopodium quinoa HOM05D003261 ORTHO05D004230 3.9e-23 110.9 60 80.0
Dinv29761 Davidia involucrata HOM05D003261 ORTHO05D004230 3.9e-23 110.9 60 80.0
THA.LOC104821781 Tarenaya hassleriana HOM05D003261 ORTHO05D004230 3.9e-23 110.9 60 78.3
Ah.08g212490 Amaranthus hybridus HOM05D003261 ORTHO05D004230 5.1e-23 110.5 58 82.8
Ciclev10004853m.g Citrus clementina HOM05D003261 ORTHO05D004230 5.1e-23 110.5 60 80.0
MBI16_g12924_MAGBIO Magnolia biondii HOM05D003261 ORTHO05D004230 5.1e-23 110.5 57 82.5
Nn4g25790 Nelumbo nucifera HOM05D003261 ORTHO05D004230 6.6e-23 110.2 60 80.0
AUR62034658 Chenopodium quinoa HOM05D003261 ORTHO05D004230 8.6e-23 109.8 58 82.8
TWI09G1311 Tripterygium wilfordii HOM05D003261 ORTHO05D004230 8.6e-23 109.8 60 78.3
BolC1t04740H Brassica oleracea HOM05D003261 ORTHO05D004230 1.1e-22 109.4 59 79.7
HPP92_023226 Vanilla planifolia HOM05D003261 ORTHO05D004230 1.1e-22 109.4 57 82.5
EL10Ac7g17420 Beta vulgaris HOM05D003261 ORTHO05D004230 1.9e-22 108.6 60 78.3
DCAR_008606 Daucus carota HOM05D003261 ORTHO05D004230 1.9e-22 108.6 60 78.3
GSVIVG01035143001 Vitis vinifera HOM05D003261 ORTHO05D004230 1.9e-22 108.6 60 76.7
Hma1.2p1_1185F.1_g264960 Hydrangea macrophylla HOM05D003261 ORTHO05D004230 2.5e-22 108.2 60 76.7
ECA234G0824 Erigeron canadensis HOM05D003261 ORTHO05D004230 3.3e-22 107.8 60 75.0
CDE08G1027 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 4.3e-22 107.5 57 80.7
CDE09G0842 Ceratophyllum demersum HOM05D003261 ORTHO05D004230 4.3e-22 107.5 57 80.7
Prupe.1G134100 Prunus persica HOM05D003261 ORTHO05D004230 4.3e-22 107.5 60 76.7
BcaC09g48619 Brassica carinata HOM05D003261 ORTHO05D004230 5.6e-22 107.1 60 75.0
Gohir.A02G049900 Gossypium hirsutum HOM05D003261 ORTHO05D004230 5.6e-22 107.1 60 76.7
Gohir.A09G238100 Gossypium hirsutum HOM05D003261 ORTHO05D004230 5.6e-22 107.1 60 76.7
Gohir.D02G055000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 5.6e-22 107.1 60 76.7
Gohir.D09G239000 Gossypium hirsutum HOM05D003261 ORTHO05D004230 5.6e-22 107.1 60 76.7
Gorai.005G060900 Gossypium raimondii HOM05D003261 ORTHO05D004230 5.6e-22 107.1 60 76.7
MD00G1128100 Malus domestica HOM05D003261 ORTHO05D004230 5.6e-22 107.1 60 75.0
MD00G1184900 Malus domestica HOM05D003261 ORTHO05D004230 5.6e-22 107.1 60 75.0
PSO017G1819 Papaver somniferum HOM05D003261 ORTHO05D004230 5.6e-22 107.1 60 76.7
Thecc.04G286600 Theobroma cacao HOM05D003261 ORTHO05D004230 5.6e-22 107.1 60 76.7
Aa31LG8G3770 Aethionema arabicum HOM05D003261 ORTHO05D004230 7.3e-22 106.7 60 75.0
Duzib151G0067 Durio zibethinus HOM05D003261 ORTHO05D004230 7.3e-22 106.7 57 80.7
FAN07G1152 Fragaria x ananassa HOM05D003261 ORTHO05D004230 9.6e-22 106.3 64 71.9
HanXRQChr17g0561551 Helianthus annuus HOM05D003261 ORTHO05D004230 9.6e-22 106.3 60 75.0
C01p47680 Brassica napus HOM05D003261 ORTHO05D004230 1.2e-21 105.9 59 78.0
Carub.0003s1638 Capsella rubella HOM05D003261 ORTHO05D004230 1.2e-21 105.9 60 75.0
COL.COLO4_06938 Corchorus olitorius HOM05D003261 ORTHO05D004230 1.2e-21 105.9 60 75.0
COL.COLO4_13845 Corchorus olitorius HOM05D003261 ORTHO05D004230 1.2e-21 105.9 60 75.0
FvH4_4g18400 Fragaria vesca HOM05D003261 ORTHO05D004230 1.2e-21 105.9 63 73.0
FAN12G0468 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.2e-21 105.9 63 73.0
FAN12G4234 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.2e-21 105.9 63 73.0
FAN17G0608 Fragaria x ananassa HOM05D003261 ORTHO05D004230 1.2e-21 105.9 63 73.0
RcHm_v2.0_Chr4g0422851 Rosa chinensis HOM05D003261 ORTHO05D004230 1.2e-21 105.9 63 73.0
Duzib052G0276 Durio zibethinus HOM05D003261 ORTHO05D004230 4.7e-21 104.0 60 75.0
Gorai.006G261700 Gossypium raimondii HOM05D003261 ORTHO05D004230 4.7e-21 104.0 60 75.0
MD16G1167100 Malus domestica HOM05D003261 ORTHO05D004230 1.1e-20 102.8 58 75.9
A01p37650 Brassica napus HOM05D003261 ORTHO05D004230 1.4e-20 102.4 61 75.4
BraA01t03826Z Brassica rapa HOM05D003261 ORTHO05D004230 1.4e-20 102.4 61 75.4
Lalb_Chr18g0051601 Lupinus albus HOM05D003261 ORTHO05D004230 3.1e-20 101.3 52 84.6
CBR_g46444 Chara braunii HOM05D003261 ORTHO05D004230 5.2e-20 100.5 63 65.1
ATR0796G128 Amborella trichopoda HOM05D003261 ORTHO05D004230 6.9e-20 100.1 57 73.7
C08p32230 Brassica napus HOM05D000211 ORTHO05D041739 1.2e-19 99.4 60 73.3
Cre10.g446900 Chlamydomonas reinhardtii HOM05D003261 ORTHO05D004230 2.6e-19 98.2 57 75.4
Mapoly0016s0006 Marchantia polymorpha HOM05D003261 ORTHO05D004230 3.4e-19 97.8 64 65.6
SMO240G0024 Selaginella moellendorffii HOM05D003261 ORTHO05D004230 3.4e-19 97.8 56 67.9
SMO340G0096 Selaginella moellendorffii HOM05D003261 ORTHO05D010935 3.4e-19 97.8 56 67.9
Pp3c16_8560 Physcomitrium patens HOM05D003261 ORTHO05D004230 4.4e-19 97.4 56 71.4
Pp3c5_15520 Physcomitrium patens HOM05D003261 ORTHO05D004230 4.4e-19 97.4 56 71.4
Prupe.6G318200 Prunus persica HOM05D003261 ORTHO05D004230 4.4e-19 97.4 54 75.9
SEGI_14553 Sequoiadendron giganteum HOM05D003261 ORTHO05D004230 5.8e-19 97.1 56 71.4
AagrBONN_evm.TU.Sc2ySwM_228.4942 Anthoceros agrestis HOM05D003261 ORTHO05D004230 9.9e-19 96.3 56 69.6
MCO14G267 Micromonas commoda HOM05D003261 ORTHO05D004230 9.9e-19 96.3 61 70.5
PRCOL_00003913 Prasinoderma coloniale HOM05D003261 ORTHO05D004230 9.9e-19 96.3 57 70.2
Actinidia40288 Actinidia chinensis HOM05D003261 ORTHO05D004230 1.9e-17 92.0 60 71.7
AL6G53110 Arabidopsis lyrata HOM05D000915 ORTHO05D001662 2.4e-17 91.7 64 67.2
Actinidia19581 Actinidia chinensis HOM05D003261 ORTHO05D004230 4.2e-17 90.9 69 66.7
Cfa002537 Carpinus fangiana HOM05D003261 ORTHO05D004230 1.0e-15 86.3 56 71.4
MD05G1262800 Malus domestica HOM05D003261 ORTHO05D004230 6.6e-15 83.6 45 80.0
MD16G1081900 Malus domestica HOM05D003261 ORTHO05D004230 1.5e-14 82.4 45 80.0
FvH4_4g23450 Fragaria vesca HOM05D003261 ORTHO05D004230 3.3e-14 81.3 48 72.9
FAN12G3743 Fragaria x ananassa HOM05D003261 ORTHO05D004230 3.3e-14 81.3 48 72.9
Thhalv10022263m.g Eutrema salsugineum HOM05D003261 ORTHO05D004230 8.1e-13 76.6 71 45.1
FAN07G0835 Fragaria x ananassa HOM05D003261 ORTHO05D004230 5.3e-12 73.9 48 68.8
PSO478G1326 Papaver somniferum HOM05D003261 ORTHO05D004230 2.0e-11 72.0 44 68.2
PGSC0003DMG400008918 Solanum tuberosum HOM05D003261 ORTHO05D004230 2.6e-11 71.6 36 86.1
Hund20540 Selenicereus undatus HOM05D003261 ORTHO05D004230 4.5e-11 70.9 69 44.9
Nitab4.5_0014715g0010 Nicotiana tabacum HOM05D003261 ORTHO05D004230 7.6e-11 70.1 40 75.0
COL.COLO4_10588 Corchorus olitorius HOM05D004885 ORTHO05D006124 9.9e-11 69.7 39 79.5
Aqoxy3G03984 Aquilegia oxysepala HOM05D003261 ORTHO05D004230 6.4e-10 67.0 42 69.0
Haze_27215 Corylus avellana HOM05D003261 ORTHO05D004230 1.9e-09 65.5 43 62.8
DCAR_030163 Daucus carota HOM05D003261 ORTHO05D004230 1.9e-09 65.5 39 74.4
DCAR_003343 Daucus carota HOM05D003261 ORTHO05D004230 3.2e-09 64.7 41 70.7
Nitab4.5_0000593g0280 Nicotiana tabacum HOM05D003261 ORTHO05D285224 5.4e-09 63.9 51 62.7
DCAR_030161 Daucus carota HOM05D003261 ORTHO05D004230 1.6e-08 62.4 39 71.8
Eucgr.H01421 Eucalyptus grandis HOM05D002800 ORTHO05D008563 3.5e-08 61.2 30 76.7
DCAR_030165 Daucus carota HOM05D003261 ORTHO05D004230 4.6e-08 60.8 36 75.0
SHI00251 Sapria himalayana HOM05D003261 ORTHO05D004230 2.3e-07 58.5 30 76.7
Haze_18316 Corylus avellana HOM05D003261 ORTHO05D014021 3.0e-07 58.2 31 83.9
TAR365G1013 Trochodendron aralioides HOM05D003261 ORTHO05D004230 3.0e-07 58.2 31 83.9
Rhsim04G0224200 Rhododendron simsii HOM05D003261 ORTHO05D004230 1.5e-06 55.8 31 80.6
HanXRQChr11g0341891 Helianthus annuus HOM05D003261 ORTHO05D024582 5.6e-06 53.9 39 66.7


User provided reference genes

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