Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G20058 Trifolium pratense HOM05D006183 ORTHO05D007844 0.0e+00 1143.6 618 100.0
Ca_08753_v3 Cicer arietinum L. HOM05D006183 ORTHO05D007844 2.1e-311 1071.6 618 90.9
Psat3g051320 Pisum sativum HOM05D006183 ORTHO05D007844 4.2e-310 1067.4 624 90.9
Medtr7g098900 Medicago truncatula HOM05D006183 ORTHO05D007844 2.6e-304 1048.1 620 88.1
Glyma.19G169500 Glycine max HOM05D006183 ORTHO05D007844 5.3e-297 1023.8 620 88.5
VMungo1383G1346 Vigna mungo HOM05D006183 ORTHO05D007844 1.1e-294 1016.1 618 86.9
Phvul.001G166600 Phaseolus vulgaris HOM05D006183 ORTHO05D007844 9.1e-289 996.5 618 85.3
Lj1g0002370 Lotus japonicus HOM05D006183 ORTHO05D007844 1.2e-288 996.1 620 85.6
arahy.Tifrunner.gnm1.ann1.73B1UV Arachis hypogaea HOM05D006183 ORTHO05D007844 8.5e-287 989.9 645 84.2
arahy.Tifrunner.gnm1.ann1.P69TYL Arachis hypogaea HOM05D006183 ORTHO05D007844 2.5e-286 988.4 650 83.5
QL09p042323 Quercus lobata HOM05D006183 ORTHO05D007844 4.5e-280 967.6 634 79.0
Prupe.8G213600 Prunus persica HOM05D006183 ORTHO05D007844 6.1e-277 957.2 628 80.7
Cfa002493 Carpinus fangiana HOM05D006183 ORTHO05D007844 3.0e-276 954.9 657 78.2
FAN15G0492 Fragaria x ananassa HOM05D006183 ORTHO05D007844 1.5e-275 952.6 636 78.1
FAN24G0209 Fragaria x ananassa HOM05D006183 ORTHO05D007844 1.5e-275 952.6 632 80.7
Haze_24717 Corylus avellana HOM05D006183 ORTHO05D007844 2.0e-275 952.2 656 78.0
Duzib133G1169 Durio zibethinus HOM05D006183 ORTHO05D007844 2.0e-275 952.2 629 77.6
FvH4_2g20290 Fragaria vesca HOM05D006183 ORTHO05D007844 5.7e-275 950.7 632 80.5
MD10G1174900 Malus domestica HOM05D006183 ORTHO05D007844 2.2e-274 948.7 628 80.1
Gohir.A07G203800 Gossypium hirsutum HOM05D006183 ORTHO05D007844 8.2e-274 946.8 631 79.9
Rhsim13G0040400 Rhododendron simsii HOM05D006183 ORTHO05D007844 8.2e-274 946.8 657 75.3
Cpa.g.sc87.44 Carica papaya HOM05D006183 ORTHO05D007844 1.1e-273 946.4 631 78.1
vmacro02713 Vaccinium macrocarpon HOM05D006183 ORTHO05D007844 1.1e-273 946.4 648 78.4
Gorai.001G237200 Gossypium raimondii HOM05D006183 ORTHO05D007844 3.1e-273 944.9 636 78.9
CiPaw.04G191000 Carya illinoinensis HOM05D006183 ORTHO05D007844 2.6e-272 941.8 654 76.0
Gohir.D07G209800 Gossypium hirsutum HOM05D006183 ORTHO05D007844 5.9e-272 940.6 636 78.3
Lalb_Chr20g0113511 Lupinus albus HOM05D006183 ORTHO05D007844 1.7e-271 939.1 615 81.5
CSS0020724 Camellia sinensis var. sinensis HOM05D006183 ORTHO05D007844 2.2e-271 938.7 669 74.0
CsaV3_3G028460 Cucumis sativus L. HOM05D006183 ORTHO05D007844 5.0e-271 937.6 647 77.6
MELO3C012834.2 Cucumis melo HOM05D006183 ORTHO05D007844 1.9e-270 935.6 651 76.0
Atru.chr5.1959 Acer truncatum HOM05D006183 ORTHO05D007844 7.2e-270 933.7 645 77.2
PGR044G1356 Punica granatum HOM05D006183 ORTHO05D007844 9.4e-270 933.3 649 74.9
RcHm_v2.0_Chr6g0286091 Rosa chinensis HOM05D006183 ORTHO05D007844 1.6e-269 932.6 634 75.7
Thecc.01G248600 Theobroma cacao HOM05D006183 ORTHO05D007844 1.0e-268 929.9 625 76.6
ClCG07G001450 Citrullus lanatus HOM05D006183 ORTHO05D007844 4.0e-268 927.9 663 75.7
Aqoxy5G00112 Aquilegia oxysepala HOM05D006183 ORTHO05D007844 3.3e-267 924.9 654 76.3
Nitab4.5_0009671g0010 Nicotiana tabacum HOM05D006183 ORTHO05D007844 1.3e-266 922.9 651 73.3
Sopen06g002920 Solanum pennellii HOM05D006183 ORTHO05D007844 1.7e-266 922.5 658 72.2
Dinv43057 Davidia involucrata HOM05D006183 ORTHO05D007844 2.2e-266 922.2 710 69.0
Potri.014G193500 Populus trichocarpa HOM05D006183 ORTHO05D007844 6.3e-266 920.6 651 75.0
TAR636G3003 Trochodendron aralioides HOM05D006183 ORTHO05D007844 6.3e-266 920.6 669 70.0
Cc01_g17710 Coffea canephora HOM05D006183 ORTHO05D007844 8.2e-266 920.2 657 73.2
Hma1.2p1_2051F.1_g312550 Hydrangea macrophylla HOM05D006183 ORTHO05D007844 1.1e-265 919.8 639 76.4
GSVIVG01028442001 Vitis vinifera HOM05D006183 ORTHO05D007844 1.1e-265 919.8 617 81.4
Sabra14G0143600 Salix brachista HOM05D006183 ORTHO05D007844 2.4e-265 918.7 646 75.1
PSO210G4577 Papaver somniferum HOM05D006183 ORTHO05D007844 3.1e-265 918.3 634 73.0
ECA248G2561 Erigeron canadensis HOM05D006183 ORTHO05D007844 5.3e-265 917.5 640 76.7
Lsat_1_v5_gn_5_180141 Lactuca sativa HOM05D006183 ORTHO05D007844 7.0e-265 917.1 641 75.5
Lj1A75T45 Lonicera japonica HOM05D006183 ORTHO05D007844 7.0e-265 917.1 652 72.5
Nitab4.5_0000326g0320 Nicotiana tabacum HOM05D006183 ORTHO05D007844 7.0e-265 917.1 650 74.3
PGSC0003DMG400014711 Solanum tuberosum HOM05D006183 ORTHO05D007844 1.2e-264 916.4 658 72.6
Ciclev10019299m.g Citrus clementina HOM05D006183 ORTHO05D007844 4.5e-264 914.4 632 76.7
MSTRG.18360 Avicennia marina HOM05D006183 ORTHO05D007844 5.0e-263 911.0 686 71.9
DCAR_018527 Daucus carota HOM05D006183 ORTHO05D007844 9.4e-262 906.7 640 70.9
Sed0027453 Sechium edule HOM05D006183 ORTHO05D007844 9.4e-262 906.7 653 75.7
EL10Ac7g17706 Beta vulgaris HOM05D006183 ORTHO05D007844 2.7e-261 905.2 636 75.5
Sc17g0002990 Simmondsia chinensis HOM05D006183 ORTHO05D007844 3.6e-261 904.8 624 74.5
Eucgr.K01415 Eucalyptus grandis HOM05D006183 ORTHO05D007844 4.7e-261 904.4 678 75.5
ATR0751G065 Amborella trichopoda HOM05D006183 ORTHO05D007844 5.2e-260 901.0 620 70.0
Hund18298 Selenicereus undatus HOM05D006183 ORTHO05D007844 6.8e-260 900.6 641 71.6
Manes.13G038900 Manihot esculenta HOM05D006183 ORTHO05D007844 1.3e-258 896.3 640 74.4
SGA_v2.0_scaffold1G00669 Striga asiatica HOM05D006183 ORTHO05D007844 1.3e-258 896.3 677 71.6
HanXRQChr03g0066991 Helianthus annuus HOM05D006183 ORTHO05D007844 2.8e-258 895.2 616 76.1
Migut.D00486 Erythranthe guttata HOM05D006183 ORTHO05D007844 2.0e-256 889.0 669 71.3
Peaxi162Scf00499g00067 Petunia axillaris HOM05D006183 ORTHO05D007844 5.0e-255 884.4 629 77.3
SalBow4G1671 Salvia bowleyana HOM05D006183 ORTHO05D007844 1.1e-254 883.2 733 68.2
Sp3g33570 Schrenkiella parvula HOM05D006183 ORTHO05D007844 1.2e-253 879.8 660 72.9
AUR62008815 Chenopodium quinoa HOM05D006183 ORTHO05D007844 1.4e-252 876.3 617 69.7
Thhalv10001927m.g Eutrema salsugineum HOM05D006183 ORTHO05D007844 2.3e-252 875.5 658 70.8
BcaB03g16820 Brassica carinata HOM05D006183 ORTHO05D007844 1.5e-251 872.8 632 75.0
AL3G53280 Arabidopsis lyrata HOM05D006183 ORTHO05D007844 2.0e-251 872.5 651 72.0
Oeu015440.1 Olea europaea HOM05D006183 ORTHO05D007844 2.0e-251 872.5 691 69.2
A07p00380 Brassica napus HOM05D006183 ORTHO05D007844 5.7e-251 870.9 621 75.0
BraA07t27830Z Brassica rapa HOM05D006183 ORTHO05D007844 3.7e-250 868.2 621 74.9
THA.LOC104814536 Tarenaya hassleriana HOM05D006183 ORTHO05D007844 2.4e-249 865.5 668 71.4
C07p00800 Brassica napus HOM05D006183 ORTHO05D007844 7.0e-249 864.0 625 76.8
CARHR110860 Cardamine hirsuta HOM05D006183 ORTHO05D007844 3.5e-248 861.7 650 74.6
BcaC06g36716 Brassica carinata HOM05D006183 ORTHO05D007844 2.9e-247 858.6 626 73.6
BolC7t40519H Brassica oleracea HOM05D006183 ORTHO05D007844 2.9e-247 858.6 626 73.6
AUR62025425 Chenopodium quinoa HOM05D006183 ORTHO05D007844 3.8e-247 858.2 629 69.6
Solyc06g008110.4 Solanum lycopersicum HOM05D006183 ORTHO05D007844 2.5e-246 855.5 660 69.4
AT2G20330 Arabidopsis thaliana HOM05D006183 ORTHO05D007844 3.3e-246 855.1 646 71.7
Carub.0003s3467 Capsella rubella HOM05D006183 ORTHO05D007844 2.8e-245 852.0 655 73.3
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 3.4e-243 845.1 489 79.6
Aa31LG8G17320 Aethionema arabicum HOM05D006183 ORTHO05D007844 7.5e-243 844.0 646 70.1
Zm00001eb222270 Zea mays HOM05D006183 ORTHO05D007844 3.2e-241 838.6 482 80.3
SHI26778 Sapria himalayana HOM05D006183 ORTHO05D007844 7.0e-241 837.4 649 66.9
SEGI_33423 Sequoiadendron giganteum HOM05D006183 ORTHO05D007844 5.9e-240 834.3 685 64.1
MBI10_g16795_MAGBIO Magnolia biondii HOM05D006183 ORTHO05D007844 1.7e-239 832.8 454 85.7
FAN27G0957 Fragaria x ananassa HOM05D006183 ORTHO05D007844 9.8e-235 817.0 443 85.3
CDE02G0751 Ceratophyllum demersum HOM05D006183 ORTHO05D007844 1.6e-232 809.7 626 68.4
COL.COLO4_20954 Corchorus olitorius HOM05D006183 ORTHO05D007844 3.9e-231 805.1 630 66.2
HPP92_025390 Vanilla planifolia HOM05D006183 ORTHO05D007844 3.3e-230 802.0 480 76.9
Lj1A75T44 Lonicera japonica HOM05D006183 ORTHO05D007844 3.7e-226 788.5 623 66.9
AagrBONN_evm.TU.Sc2ySwM_228.230 Anthoceros agrestis HOM05D006183 ORTHO05D007844 2.7e-224 782.3 618 62.8
Actinidia37559 Actinidia chinensis HOM05D006183 ORTHO05D007844 3.6e-221 771.9 541 78.9
CBR_g29722 Chara braunii HOM05D006183 ORTHO05D007844 1.2e-195 687.2 500 65.0
Mapoly0020s0160 Marchantia polymorpha HOM05D006183 ORTHO05D007844 1.2e-187 660.6 653 58.7
Pp3c3_26410 Physcomitrium patens HOM05D006183 ORTHO05D007844 2.6e-187 659.4 628 61.3
Actinidia30118 Actinidia chinensis HOM05D006183 ORTHO05D007844 2.1e-184 649.8 625 59.0
SMO117G0187 Selaginella moellendorffii HOM05D006183 ORTHO05D007844 7.6e-179 631.3 620 54.0
MD05G1186900 Malus domestica HOM05D006183 ORTHO05D007844 5.2e-159 565.5 554 56.9
SEGI_26680 Sequoiadendron giganteum HOM05D006183 ORTHO05D007844 1.8e-156 557.0 534 57.7
Dinv19261 Davidia involucrata HOM05D006183 ORTHO05D007844 3.5e-155 552.7 457 67.2
Cre04.g217750 Chlamydomonas reinhardtii HOM05D006183 ORTHO05D007844 5.8e-126 455.7 515 46.6
MCO16G174 Micromonas commoda HOM05D006183 ORTHO05D007844 1.5e-121 441.0 495 46.7
Rhsim08G0025400 Rhododendron simsii HOM05D006183 ORTHO05D007844 1.7e-106 391.0 364 58.2
BcaNung04798 Brassica carinata HOM05D006183 ORTHO05D007844 1.3e-101 374.8 297 64.6
C09p15190 Brassica napus HOM05D006183 ORTHO05D007844 1.3e-101 374.8 297 64.6
BolC9t54425H Brassica oleracea HOM05D006183 ORTHO05D007844 1.3e-101 374.8 297 64.6
unitig_22.g6309 Utricularia gibba HOM05D006183 ORTHO05D007844 2.4e-100 370.5 387 59.9
AagrBONN_evm.TU.Sc2ySwM_117.1688 Anthoceros agrestis HOM05D006183 ORTHO05D007844 1.2e-75 288.5 313 52.4
SHI26811 Sapria himalayana HOM05D006183 ORTHO05D007844 3.8e-69 266.9 339 46.0
PRCOL_00006356 Prasinoderma coloniale HOM05D006183 ORTHO05D007844 9.3e-68 262.3 522 35.4
Cfa024676 Carpinus fangiana HOM05D006183 ORTHO05D007844 2.5e-60 237.7 493 34.5
unitig_22.g6310 Utricularia gibba HOM05D006183 ORTHO05D007844 2.7e-51 207.6 109 85.3
AagrBONN_evm.TU.Sc2ySwM_117.1686 Anthoceros agrestis HOM05D006183 ORTHO05D007844 1.0e-37 162.5 106 71.7
RcHm_v2.0_Chr6g0286201 Rosa chinensis HOM05D006183 ORTHO05D007844 9.4e-28 129.4 74 78.4
Dinv36951 Davidia involucrata HOM05D006183 ORTHO05D007844 2.5e-12 78.2 44 79.5
HanXRQChr13g0404811 Helianthus annuus HOM05D006183 ORTHO05D007844 2.5e-12 78.2 60 61.7
HanXRQChr14g0442591 Helianthus annuus HOM05D006183 ORTHO05D007844 4.3e-12 77.4 60 60.0
AagrBONN_evm.TU.Sc2ySwM_117.1687 Anthoceros agrestis HOM05D006183 ORTHO05D007844 5.6e-12 77.0 56 64.3
BcaB07g31601 Brassica carinata HOM05D006183 ORTHO05D007844 4.7e-11 73.9 64 60.9
Cfa023113 Carpinus fangiana HOM05D005323 ORTHO05D017328 1.8e-10 72.0 201 26.4
QL09p042264 Quercus lobata HOM05D006183 ORTHO05D007844 4.0e-10 70.9 70 54.3
HPP92_028272 Vanilla planifolia HOM05D006183 ORTHO05D007844 2.6e-09 68.2 39 74.4
ATR0743G149 Amborella trichopoda HOM05D005323 ORTHO05D006820 1.3e-08 65.9 204 24.5
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 2.2e-08 65.1 313 24.3
Lalb_Chr14g0364721 Lupinus albus HOM05D005323 ORTHO05D006820 2.2e-08 65.1 202 25.7
CiPaw.02G099700 Carya illinoinensis HOM05D005323 ORTHO05D006820 2.9e-08 64.7 203 25.6
Peaxi162Scf00883g00035 Petunia axillaris HOM05D005323 ORTHO05D006820 2.9e-08 64.7 204 24.0
Oeu052089.1 Olea europaea HOM05D000700 ORTHO05D000397 4.9e-08 63.9 69 55.1
DCAR_001441 Daucus carota HOM05D000347 ORTHO05D001997 8.3e-08 63.2 211 23.7
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 8.3e-08 63.2 240 24.2
Sc10g0009500 Simmondsia chinensis HOM05D003769 ORTHO05D004521 1.4e-07 62.4 253 27.3
arahy.Tifrunner.gnm1.ann1.157ZG7 Arachis hypogaea HOM05D005323 ORTHO05D006820 1.9e-07 62.0 202 25.2
arahy.Tifrunner.gnm1.ann1.353MUE Arachis hypogaea HOM05D005323 ORTHO05D006820 1.9e-07 62.0 202 25.2
Ciclev10020286m.g Citrus clementina HOM05D000347 ORTHO05D001997 2.4e-07 61.6 215 24.2
Rhsim11G0131900 Rhododendron simsii HOM05D000347 ORTHO05D001997 2.4e-07 61.6 240 22.5
Cre06.g255400 Chlamydomonas reinhardtii HOM05D005323 ORTHO05D006820 3.2e-07 61.2 114 28.9
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 5.4e-07 60.5 203 25.1
Atru.chr11.1239 Acer truncatum HOM05D000347 ORTHO05D001997 7.0e-07 60.1 215 23.3
Haze_26415 Corylus avellana HOM05D000347 ORTHO05D001997 7.0e-07 60.1 130 26.2
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 9.2e-07 59.7 240 23.8
Hund10227 Selenicereus undatus HOM05D003769 ORTHO05D000105 9.2e-07 59.7 251 25.9
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.6e-06 58.9 198 22.7
vmacro01787 Vaccinium macrocarpon HOM05D000347 ORTHO05D001997 1.6e-06 58.9 171 23.4
EL10Ac5g11428 Beta vulgaris HOM05D003769 ORTHO05D004521 2.0e-06 58.5 306 26.8
Oeu000196.1 Olea europaea HOM05D000347 ORTHO05D001997 2.7e-06 58.2 141 24.8
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 2.7e-06 58.2 136 29.4
Migut.N03056 Erythranthe guttata HOM05D005323 ORTHO05D006820 3.5e-06 57.8 111 30.6
Migut.O00692 Erythranthe guttata HOM05D005323 ORTHO05D006820 3.5e-06 57.8 111 30.6
MCO12G477 Micromonas commoda HOM05D009332 ORTHO05D011893 3.5e-06 57.8 188 29.3
Nitab4.5_0000441g0190 Nicotiana tabacum HOM05D000992 ORTHO05D001928 3.5e-06 57.8 232 25.4
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 4.6e-06 57.4 232 25.0
HPP92_002480 Vanilla planifolia HOM05D000347 ORTHO05D001997 4.6e-06 57.4 140 26.4
CBR_g4366 Chara braunii HOM05D005323 ORTHO05D006820 6.0e-06 57.0 111 31.5
Cre07.g334300 Chlamydomonas reinhardtii HOM05D015581 ORTHO05D007844 6.0e-06 57.0 234 25.2
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 6.0e-06 57.0 242 23.6
SHI06205 Sapria himalayana HOM05D005323 ORTHO05D000023 7.8e-06 56.6 152 25.7
SMO367G1087 Selaginella moellendorffii HOM05D003335 ORTHO05D003853 7.8e-06 56.6 136 28.7


User provided reference genes

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