Gene: AT2G20330

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G20330
  • Transcript Identifier AT2G20330.1
  • Gene Type Coding gene
  • Location Chr2 : 8772888-8775518 : negative

Gene Family Information

  • ID HOM05D006183
  • #Genes/#Species 128/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G20330.1
  • uniprot Q9SK69

Descriptions

  • Description Transducin/WD40 repeat-like superfamily protein
  • Computational description Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 32306 Blast hits to 19564 proteins in 654 species: Archae - 48; Bacteria - 6195; Metazoa - 11628; Fungi - 6530; Plants - 3814; Viruses - 23; Other Eukaryotes - 4068 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1903775
IBA
Gene Ontologyregulation of DNA double-strand break processing1
GO:2001173
IBA
Gene Ontologyregulation of histone H2B conserved C-terminal lysine ubiquitination1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus1 2
GO:0080008
IPI
ISS
Gene OntologyCul4-RING E3 ubiquitin ligase complex2 3
GO:0035861
IBA
Gene Ontologysite of double-strand break1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR001680 WD40 repeat
IPR036322 WD40-repeat-containing domain superfamily
IPR020472 G-protein beta WD-40 repeat
Mapman id Description
19.2.2.8.3.4.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL4-DDB1 E3 ubiquitin ligase complexes.substrate adaptor activities.substrate adaptor (OZS3)