Gene: Solyc06g008110.4

General Information

Structural Information

Species Solanum lycopersicum
Gene Identifier Solyc06g008110.4
Transcript Identifier Solyc06g008110.4.1
Gene Type Coding gene
Location SL4.0ch06 : 2010727-2015464 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D006183
#Genes/#Species 128/95
Phylogenetic origin

ID ORTHO05D007844
#Genes/#Species 126/95
Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

tid Solyc06g008110.4.1
uniprot A0A3Q7GS83
gene_id Solyc06g008110

Descriptions

Short descriptions
Ortholog descriptions

Description WD40 repeat (AHRD V3.3 *** A0A200PVQ0_9MAGN)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:1903775	IBA	GOA Database	regulation of DNA double-strand break processing
GO:2001173	IBA	GOA Database	regulation of histone H2B conserved C-terminal lysine ubiquitination

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0035861	IBA	GOA Database	site of double-strand break
GO:0005634	IBA	GOA Database	nucleus
GO:0080008	ISO	PLAZA Integrative Orthology	Cul4-RING E3 ubiquitin ligase complex	AT2G20330

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001680	WD40 repeat
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily

Mapman id	Description
19.2.2.8.3.4.1	Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL4-DDB1 E3 ubiquitin ligase complexes.substrate adaptor activities.substrate adaptor (OZS3)