Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2905.9 1485 100.0
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2778.0 1486 95.4
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2774.6 1485 95.4
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2760.7 1487 94.8
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2673.7 1486 91.7
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2670.2 1487 91.2
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2654.8 1486 90.5
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2631.7 1487 89.7
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2627.4 1487 89.6
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2613.6 1486 89.2
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2600.1 1477 89.2
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2557.3 1486 87.2
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2551.9 1478 87.6
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2442.5 1491 83.0
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2397.1 1498 81.0
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2385.1 1492 80.8
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2378.2 1497 80.6
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2368.2 1498 79.9
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2367.0 1497 79.9
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2355.1 1498 79.6
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2352.8 1499 79.3
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2352.4 1497 79.7
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2347.0 1498 79.2
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2345.1 1500 79.0
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2330.1 1489 79.2
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2328.1 1493 79.5
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2322.7 1498 78.6
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2320.8 1498 77.9
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2315.4 1500 78.6
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2312.7 1497 78.5
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2298.1 1491 77.7
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2296.5 1489 78.4
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2295.8 1492 77.2
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2295.0 1492 77.2
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2286.9 1492 77.0
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2281.9 1492 76.7
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2273.0 1483 77.0
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2272.7 1480 78.4
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2270.7 1497 77.0
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2259.6 1532 75.4
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2254.9 1554 74.6
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2246.9 1499 76.3
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2233.4 1497 74.7
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2224.1 1492 75.4
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2219.9 1494 74.9
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2219.1 1447 78.1
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2201.4 1532 73.4
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2198.7 1491 74.6
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2197.9 1483 75.3
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2197.5 1492 74.5
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2195.6 1484 75.1
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2193.3 1482 74.9
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2185.6 1496 74.5
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2185.6 1569 72.3
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2182.9 1497 75.6
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2179.8 1498 74.0
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2179.8 1492 74.2
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2177.5 1483 75.0
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2177.1 1497 74.6
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2173.7 1495 74.1
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2169.0 1493 73.8
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2167.5 1497 74.0
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2141.3 1496 73.8
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2140.2 1484 74.2
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2134.0 1552 71.8
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2133.6 1489 73.7
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2133.6 1488 73.4
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2127.4 1486 73.0
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2122.4 1488 73.1
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2112.8 1491 72.2
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2112.0 1484 72.8
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2109.7 1486 73.1
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2105.1 1484 73.0
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2104.7 1496 72.9
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 2101.6 1497 71.7
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 2101.2 1483 72.3
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2100.5 1485 73.0
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2097.0 1494 72.6
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2095.9 1493 72.7
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2095.1 1492 72.7
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2094.3 1495 72.4
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2091.6 1496 72.4
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2086.2 1482 72.6
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2081.2 1496 72.1
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2072.7 1481 71.7
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2067.4 1498 71.2
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 2049.6 1302 81.0
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 2044.2 1588 69.4
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 2041.9 1472 71.1
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 2038.1 1457 72.0
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2032.7 1305 79.5
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2032.3 1491 69.4
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2025.0 1575 67.7
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2023.8 1493 69.0
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2004.2 1275 79.8
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2000.7 1309 78.6
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1952.2 1498 68.3
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1877.4 1480 65.7
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1875.1 1222 78.5
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1874.4 1392 71.6
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1859.3 1485 64.1
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1851.6 1302 73.3
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1845.5 1366 70.8
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1797.3 1445 65.9
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1770.7 1423 66.0
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1766.9 1434 62.9
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1703.0 1081 82.7
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1642.5 988 82.8
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1625.9 1517 57.5
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1612.0 1525 56.4
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1471.8 1416 58.2
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1394.4 1213 59.7
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1374.8 1307 56.5
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1362.1 1387 55.4
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1313.5 1372 54.8
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1126.7 745 76.2
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1105.5 1281 51.6
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1105.5 738 78.0
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.0e-311 1074.3 848 64.9
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 2.6e-265 919.8 788 62.4
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 8.9e-250 868.2 923 55.0
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 4.0e-242 842.8 710 63.1
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.2e-238 831.2 579 70.3
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 5.3e-218 762.7 609 64.5
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 9.4e-199 698.7 893 47.3
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.7e-187 661.4 361 85.9
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.9e-184 650.6 598 59.7
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 4.5e-177 626.7 742 48.9
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 2.0e-164 584.7 441 72.1
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 3.5e-161 573.9 477 66.9
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.5e-161 573.5 469 64.4
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 2.3e-141 508.1 568 54.0
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.3e-120 438.3 770 38.4
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 1.0e-104 386.3 1821 26.4
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 1.3e-94 352.8 1562 27.5
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 4.8e-94 350.9 445 45.2
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 1.2e-92 346.3 1598 25.7
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 3.6e-89 334.7 218 77.1
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 3.0e-80 305.1 349 51.6
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.5e-76 292.7 224 67.0
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 4.7e-73 281.2 155 81.3
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.5e-71 276.2 230 61.7
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 2.8e-70 271.9 152 82.2
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.4e-69 269.6 239 60.7
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 1.1e-66 260.0 195 66.7
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 8.0e-65 253.8 273 53.1
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 6.8e-48 197.6 102 91.2
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 2.7e-44 185.7 190 55.8
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 7.8e-44 184.1 1333 24.0
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 5.8e-39 167.9 217 48.8
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 9.8e-39 167.2 163 54.0
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 1.2e-36 160.2 182 51.6
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.3e-34 151.8 344 34.3
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 5.6e-34 151.4 130 56.9
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 4.0e-32 145.2 113 64.6
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 1.0e-27 130.6 107 63.6
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 3.0e-27 129.0 102 63.7
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 1.1e-24 120.6 56 92.9
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 3.4e-23 115.5 102 62.7
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 4.4e-23 115.2 65 78.5
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 7.6e-23 114.4 67 80.6
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.0e-19 104.0 134 49.3
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.4e-16 93.6 112 51.8
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 7.6e-15 87.8 53 79.2
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 7.6e-15 87.8 53 79.2
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.2e-14 86.3 70 64.3
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 1.3e-09 70.5 34 91.2
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 2.8e-09 69.3 54 64.8
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 8.1e-09 67.8 40 82.5
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 1.2e-07 63.9 149 29.5
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 4.4e-07 62.0 149 29.5
SEGI_21189 Sequoiadendron giganteum HOM05D001486 ORTHO05D037216 4.9e-06 58.5 53 58.5


User provided reference genes

Program Settings