Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 0.0e+00 1254.2 657 100.0
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 0.0e+00 1126.3 660 86.5
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 6.0e-299 1030.4 665 78.9
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 2.9e-285 984.9 661 76.1
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 4.2e-284 981.1 660 75.5
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.1e-263 913.3 666 71.6
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 5.3e-263 911.0 690 69.4
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 2.2e-253 879.0 591 75.1
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 1.1e-244 850.1 657 68.8
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 1.1e-236 823.5 675 63.7
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 1.5e-236 823.2 679 64.1
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 1.2e-233 813.5 675 63.9
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 9.8e-233 810.4 682 62.9
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 2.0e-230 802.7 668 64.4
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 1.9e-228 796.2 674 61.6
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 7.3e-228 794.3 671 62.9
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 6.1e-227 791.2 674 61.1
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 3.5e-222 775.4 672 61.9
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 3.9e-221 771.9 703 59.3
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 7.3e-220 767.7 659 61.3
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 2.1e-219 766.1 447 84.8
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 2.8e-219 765.8 663 61.5
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 2.0e-217 759.6 673 60.2
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 4.4e-217 758.4 657 60.4
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 2.9e-216 755.7 677 60.1
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 4.1e-215 751.9 666 59.9
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 9.2e-215 750.7 703 56.8
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 1.7e-213 746.5 662 58.5
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 2.8e-211 739.2 660 57.6
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 1.4e-210 736.9 713 56.0
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 2.3e-210 736.1 660 57.3
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 3.1e-210 735.7 662 58.5
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 6.4e-208 728.0 694 56.2
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 3.2e-207 725.7 679 58.5
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 7.1e-207 724.5 674 57.9
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 9.2e-207 724.2 665 57.7
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 4.6e-206 721.8 674 57.1
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 5.2e-202 708.4 668 56.3
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.5e-201 706.8 678 56.6
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 1.7e-200 703.4 678 56.3
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 6.4e-200 701.4 695 55.1
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.2e-198 697.2 709 54.9
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 8.6e-197 691.0 673 54.5
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 1.1e-194 684.1 696 54.5
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 1.1e-194 684.1 661 54.9
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 2.0e-193 679.9 688 54.5
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 2.6e-193 679.5 730 51.6
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 5.4e-191 671.8 627 56.8
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 3.5e-190 669.1 647 56.1
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 1.0e-189 667.5 843 47.1
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 3.3e-188 662.5 750 50.9
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 5.6e-188 661.8 671 55.6
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.8e-186 656.8 611 57.6
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 1.1e-183 647.5 671 53.4
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 2.4e-183 646.4 670 53.9
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 4.2e-183 645.6 670 53.7
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 1.2e-182 644.0 674 53.4
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 2.7e-182 642.9 671 53.1
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 1.0e-181 641.0 667 52.8
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 3.9e-181 639.0 675 53.0
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 8.7e-181 637.9 671 52.9
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 1.5e-180 637.1 671 53.4
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 1.5e-180 637.1 671 53.4
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 1.5e-180 637.1 671 53.4
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 2.5e-180 636.3 667 52.9
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 1.6e-179 633.6 669 52.9
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 2.0e-177 626.7 677 50.8
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 5.8e-177 625.2 668 52.8
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 4.9e-176 622.1 671 51.4
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 8.7e-173 611.3 584 55.8
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 6.9e-170 601.7 607 54.4
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.3e-160 570.9 666 47.4
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 8.5e-160 568.2 667 47.7
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 1.6e-158 563.9 593 53.0
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 1.6e-158 563.9 668 49.6
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 9.7e-156 554.7 605 52.2
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 7.7e-153 545.0 583 52.8
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 7.7e-153 545.0 666 48.0
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 5.0e-152 542.3 403 72.7
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 9.4e-151 538.1 661 47.8
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 2.7e-150 536.6 522 56.9
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 3.0e-149 533.1 657 47.9
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 5.7e-148 528.9 662 48.2
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 2.2e-147 526.9 665 47.1
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 2.2e-144 516.9 661 46.4
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 6.5e-144 515.4 457 57.1
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 3.6e-142 509.6 639 47.6
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 3.6e-142 509.6 454 59.3
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 2.2e-136 490.3 660 44.8
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 3.6e-134 483.0 660 44.1
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 8.0e-134 481.9 678 43.1
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.2e-132 478.0 663 42.8
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 2.6e-132 476.9 571 50.1
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 6.3e-131 472.2 491 53.2
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 8.8e-125 451.8 586 46.2
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 2.4e-114 417.2 757 37.1
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 7.5e-108 395.6 663 37.6
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 8.3e-107 392.1 640 41.9
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 4.6e-105 386.3 456 46.7
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 7.5e-100 369.0 665 37.3
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 4.1e-98 363.2 684 35.5
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 5.4e-98 362.8 553 40.9
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 2.1e-97 360.9 668 34.7
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 8.9e-93 345.5 550 39.6
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 3.3e-87 327.0 401 48.4
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.5e-81 307.0 272 59.6
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 2.4e-77 294.3 522 38.7
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 2.7e-73 280.8 236 64.0
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 6.9e-69 266.2 226 59.3
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 1.5e-68 265.0 311 51.8
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 7.9e-65 252.7 286 50.3
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 8.7e-64 249.2 170 72.9
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 1.4e-61 241.9 908 25.7
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 9.0e-61 239.2 170 71.2
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 3.8e-59 233.8 164 71.3
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 4.6e-57 226.9 146 77.4
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 6.0e-57 226.5 174 66.1
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 6.7e-56 223.0 135 81.5
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 7.4e-55 219.5 166 69.3
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 5.5e-50 203.4 357 37.8
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 5.5e-50 203.4 144 70.8
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 3.7e-46 190.7 176 59.7
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 4.8e-46 190.3 174 54.0
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 4.2e-42 177.2 143 64.3
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 1.2e-41 175.6 150 64.7
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 3.9e-40 170.6 146 61.0
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 1.1e-39 169.1 137 63.5
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 5.5e-34 150.2 163 52.8
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 7.2e-34 149.8 121 61.2
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 2.4e-29 134.8 276 34.4
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 1.2e-25 122.5 103 59.2
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 6.7e-24 116.7 144 45.8
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 2.0e-23 115.2 674 24.5
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 2.6e-23 114.8 153 43.1
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 1.2e-20 105.9 67 79.1
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.2e-20 105.9 70 68.6
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 1.6e-20 105.5 157 38.9
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 5.5e-18 97.1 338 25.4
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 1.8e-13 82.0 64 59.4
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 3.8e-11 74.3 274 24.5
RcHm_v2.0_Chr5g0078731 Rosa chinensis HOM05D004944 ORTHO05D005989 1.0e-08 66.2 84 42.9
RcHm_v2.0_Chr2g0114761 Rosa chinensis HOM05D004944 ORTHO05D005989 1.4e-08 65.9 113 38.9
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 5.2e-08 63.9 171 27.5
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 9.8e-07 59.7 57 59.6


User provided reference genes

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